BAC Information

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BAC

Clone NameMSMg01-119M12
Chromosome14 (Build37)
Map Location 13,629,684 - 13,630,186
singlet/doubletsinglet
Overlap geneCadps
Upstream genePtprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik, EG382844, LOC100042045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119M12.T7 (MSMg01no119_m12.b1)MSMg01-119M12.TJ (MSMg01no119_m12.g1)
ACCAG330315AG330316
length709703
length of high quality
(start - end)
270 (43 - 312)502 (71 - 572)
definitionCHROMAT_FILE: MSMg01no119_m12.b1 PHD_FILE: MSMg01no119_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:01 2005CHROMAT_FILE: MSMg01no119_m12.g1 PHD_FILE: MSMg01no119_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGATCTTCCAAGTCTTTTATCATAAAGGGGTGTTGGATTTTGTCAAA
TGCTTTCTCAGCATCTAACAAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAGTGGATTATGTTGATGGATTTCTGTATATTGAACCATCCC
TGCATCCCTGGGATGAAGCCTACTTGATCATGATGGATGATCATTTGGAT
TTATTTTTGGATTTGTTTGGCGAGAATTTTATTGAGTATTTTTGCATCGA
TAATCATAAGGGAAATTGTTTTGAAGCTCTCTTTCTTTGTTGGGTCTCTG
TGTGGTTTTAGTATCACAGCAATTGTGGCTTCATAGAATGAATTGTGTAG
AGTACCTACTGCCTCCATTTTGTGGAATATTTTGAGGAGTATCAGAATCA
GGTTCCTCATTGACGGTCTGATAGAACTCTGCACTAAACCCATCTCGTCC
TGGACATTTTTGGTCTGGGAGACTATCAATGACTGCTTCTATTTCTTTAC
TGTAATATGGCATTGTTCACATCATTAATCTGATCCTTGATCCCCTTTCG
TTACCTGGCCTCTGTCTATGAAATTGCTCCCTTCTCTTCTCCACTTTCTA
GTTTTGTTGTTCATCAGTTTTTTTCTTCACATTTTCTGTTTTTTTTTCTT
TTTTACTCC
ATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGGAAGAGAAAAATTAAAACTTGGGCAGT
CAATTATAAGGCAAACAAGCATAATCAAGAGTTACAAGCAGCTTATCAAG
GAAAAGTTAGTACTTTTGGAATGCTGGAAAGAGTTTCACCTGCAGACATT
AATCAAAGAGAGGATGATTAATGAGTTATGCTGGAGAGCCCCACATGAGT
TAGGACTTTTCCGAAATAGGGCACACTCACCTTTTGTTCCTTTACGGGGT
TTTCCAGGTGTGTAATGGTGTCAGATGTATGATGAGAGCAAGCACTTTTG
CAAGGTTTATGTTTAGATGCCATTATACTGCAGCAGCAGACAGTGAGCAG
TCAGTATAGTTGGCCATCGAGGTACCTGACTTTGGGTGGTCTCATGTCCT
TCTGTTGAGTGATCTCGTGTTGTCCTGTTCAAAGCTCACTGCCACACATC
AGCCTTTTGCCATTGTACAACTGGTTTTCTTCTCCCTGTGCCTGTAACCT
TCTCTCCACAAAATAAAAAATGCAGAGTGCTGGGAATCCTCTGTAAAGAC
ATATATGCTTTACACTACTGAGGCATCTCTTCACACTACTATTAGTATTA
CTTCTGAATATATTATAAACCAGTTGTATTTCTGGAGATGCAAATATGAG
GCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_m12.g1 MSMg01no119_m12.g1 CHROMAT_FILE:
MSMg01no119_m12.g1 PHD_FILE: MSMg01no119_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:01 2005
         (502 letters)



>mm_chr14_13629484_13630386
          Length = 903

 Score =  897 bits (464), Expect = 0.0
 Identities = 494/504 (98%), Gaps = 3/504 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggaagaga-aaaattaaaacttgggcagtcaattataaggcaaacaagcataatcaag 59
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 agggaagagatgaaattaaaacttgggcagtcaattataaggcaaacaagcataatcaag 644

                                                                       
Query: 60  agttacaagcagcttatcaaggaaaagttagtacttttggaatgctggaaagagtttcac 119
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 643 agttacaagcagcttatcaaggaaaagttagtatttttggaatgctggaaagagtttcac 584

                                                                       
Query: 120 ctgcagacattaatcaaagagaggatgattaatgagttatgctggagagccccacatgag 179
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttgcagacattaatcaaagagaggatgattaatgagttatgctggagagccccacatgag 524

                                                                       
Query: 180 ttaggacttttccgaaatagggcacactcaccttttgttcctttacggggttttccaggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttaggacttttccgaaatagggcacactcaccttttgttcctttacggggttttccaggt 464

                                                                       
Query: 240 gtgtaatggtgtcagatgtatgatgagagcaagcacttttgcaaggtttatgtttagatg 299
           |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 463 gtgtaatggtgtcagatgtatgatgagagcaagcacttttacaaggctaatgtttagatg 404

                                                                       
Query: 300 ccattatactgcagcagcagacagtgagcagtcagtatagttggccatcgaggtacctga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ccattatactgcagcagcagacagtgagcagtcagtatagttggccatcgaggtacctga 344

                                                                       
Query: 360 ctttgggtggtctcatgtccttctgttgagtgatctcgtgttgtcctgttcaaagctca- 418
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 343 ctttgggtggtctcatgtccttctgttgagtgatctcatgttgtcctgttcaaagctcac 284

                                                                       
Query: 419 ctgccacacatcagccttttgccattgtacaactggttttcttctccctgtgcctgtaac 478
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ct-ccacacatcagccttttgccattgtacaactggttttcttctccctgtgcctgtaac 225

                                   
Query: 479 cttctctccacaaaataaaaaatg 502
           ||||||||||||||||||||||||
Sbjct: 224 cttctctccacaaaataaaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space:   439356
Effective search space used:   439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)