BAC Information

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BAC

Clone NameMSMg01-119O23
Chromosome14 (Build37)
Map Location 115,439,285 - 115,439,385
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668791, LOC100043821, LOC100043521
Downstream geneGpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119O23.T7 (MSMg01no119_o23.b1)MSMg01-119O23.TJ (MSMg01no119_o23.g1)
ACCAG330431AG330432
length725750
length of high quality
(start - end)
373 (42 - 414)101 (70 - 170)
definitionCHROMAT_FILE: MSMg01no119_o23.b1 PHD_FILE: MSMg01no119_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:13 2005CHROMAT_FILE: MSMg01no119_o23.g1 PHD_FILE: MSMg01no119_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCCGCGGAATT
CAAAACAACCCTGACATTCCTCCTCATACCAGTCAGAATGGCTAAAATCG
AAGACTCAAATGACAGCAGATGCTGACAAGGATGTGGAGAAAGAGAATCA
CTGCTCCATTGCTGGTGGGAATGCAAGCTGGTATAACCACTTGGGAAATC
AGTTTGGCTACTCCTCAGAAAATTGGACATAGTACTACTGGAGGACCCAG
CAATGTCACTCCTGGGTATATACCCAGAAGATGCTCCAACTTGTAATAAG
GACACATGCTCTACTATGTTTATTGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGGTGTCCCTCAACAGAGGAGTGGATACAGAAACGTG
TATACATTTACACAATAGAGACCCCAGCCGTTATTAAAAACAATGATTTT
ATGAAATTCTTAATTTGGAGGATATCATCCTGAGCGAGATAACTTAATTC
CCATAGACTACACCTGACATGCACTCCTTGCATATTTGGACACTAAATCT
CAACTTCACAATGCCCTCGATACATCTTCTTCCCCCTTTCCTCTACTCCC
TCTTTTCCCCCTTTTCCCCTTCTTTTATTCAATTTAACCCCCTTCCTTCC
CCTTCCATACCCCTTTTTCCATTGGGGTTCCCAAACCCCCAAAAATGCCC
CATTATAACTTTTTTTTTTTTCCCC
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCAATTCGGTTTTTACAGTTTCCTTGTAAAAAGCACAGG
ACAGAAGTGGCATGTGCTTTGCAAAGACTACGAACTGGATTGCTCGAAAC
CAGTTTGAAATTGCTGCTTGCTATACATGTTATGAATTCTCAATTCTTTT
AATAAGGTTTCTGATAACTCTGGAATTTCCTGAACCACTGTACGTAGTAC
GCAGTGGCCTTATCTCAGCTCTGGCGTTGCTTACAATGCACTTTCCGAGC
CCTGTGCTCTCTCTCTACCACATATTCCAGACTTCTCGCTGTTGTACTGG
CTTTAGGTAGGTCCCTCACGTACCGCTCCTGCAGCTCCCATTTTCTCATG
TCCCTTTCCCCACGCTCCCACCTTCTTATGACATTTTCCCGCCCATTTTT
TGCCACCCCCCCGTACTTGTGATCCCCCTCACCTTTCCTCCCCCTTTTCC
CCCTTTTCCCCCTTTTCATTTTTTCCCCCCACCTATTTCGTTCCCATAAC
CAACCCTTTTTTATACTTCCCTCCCCCTTCTCCTTTTTCCCTTTCTTTCC
CCCTTTTTCCCTTTTCCCTCTCCAATCCCCCTCCTTTTTTTTTTTTCTTT
TTTTTCCTTACCCTTCCCCCCTCTCCCCTCCTTTTTTCCCCCTTTTTCCC
TTTCCTAACGCTTTCTTTTTCCCCATACCCCCCCCTTTTTTCCTCTTTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_o23.g1 MSMg01no119_o23.g1 CHROMAT_FILE:
MSMg01no119_o23.g1 PHD_FILE: MSMg01no119_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:13 2005
         (101 letters)



>mm_chr14_115439085_115439585
          Length = 501

 Score =  195 bits (101), Expect = 5e-55
 Identities = 101/101 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttttacagtttccttgtaaaaagcacaggacagaagtggcatgtgctttgcaaagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttttacagtttccttgtaaaaagcacaggacagaagtggcatgtgctttgcaaagact 260

                                                    
Query: 61  acgaactggattgctcgaaaccagtttgaaattgctgcttg 101
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgaactggattgctcgaaaccagtttgaaattgctgcttg 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 501
Length adjustment: 8
Effective length of query: 93
Effective length of database: 493
Effective search space:    45849
Effective search space used:    45849
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)