BAC Information

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BAC

Clone NameMSMg01-120H18
Chromosome14 (Build37)
Map Location 85,509,361 - 85,509,507
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120H18.T7 (MSMg01no120_h18.b1)MSMg01-120H18.TJ (MSMg01no120_h18.g1)
ACCAG330841AG330842
length707773
length of high quality
(start - end)
528 (47 - 574)165 (96 - 260)
definitionCHROMAT_FILE: MSMg01no120_h18.b1 PHD_FILE: MSMg01no120_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:56 2005CHROMAT_FILE: MSMg01no120_h18.g1 PHD_FILE: MSMg01no120_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGC
GGAATTCTTGATTTCCCCAAACTTTTATCATGAATGGGTGTTGGATCTTG
TCAAATGCTTTCTCCGCATCTAACGAGATGATCATGTGGTTTTTGTCTTT
GAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACC
ATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCT
TTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGC
ATTGATATTCATAAGAGAATTTGGTCTGAAGTTCTCTATCTTTGTTGGAT
CTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTG
GGTAGAGTACCTTCTACTTCTGTCTTGTGAAATAGTTTGTGCAGAACTGG
AATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTG
GTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTA
TTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTC
AACTTTGGTACCTGGCATCTGCCCAGAAATTTGTCCATTTCTTCGAGGTT
TTCCAGTTTTTGTTGAGTATAGCCTTTTGTAAAAGGAAAAGACGGCGTTT
TGGATCN
GAGTGGGAAGGAAAACACGGAATTAACTCAACAGAACCCAAAAATCAAAA
GCGATGAAGTGGTAGGCTGGCGGCGCCTGTTCTCAAATTTAGGTGAACTA
TAGAATTTCCCCGGAATTCACCATGGTGGTAGAATTCCGCCATGACTCCA
TGGGGGTACTGGGCTGTACTGGGCCACATTTTGGGTCAATTACTGAAACA
CCTGAGGTCTGGGGCACAAAAGGACACCTTTGGCACAGGTCTGGCCTCAT
CCCTTGCCTGACAATATTGAGAGATAGTCCTGTAGACTTAAGAGTAGGAG
AGCTGAACACACAGCTGGCCAGCTGCAGCTGTGCGAGAGGAGAGGAGAAC
TGAACTGAGCCCATAATCATCAGAGTGGGAGATCTGGGCCCTGGCTCTTA
CAGCTGAGGCTTTGAATGAGCCAGCCAGGGAAGGACAGTAGAGCTTGCCT
CAGAAGTCTAGGTGCAAGACAGTTGGTGAGCAAACAAGCTCAGATACCGC
TCAGGCTCAGGTCCACTCCAATACTTACCCCATTGGTGAACTGCTGGAGC
ATGTAAAGGATCCTGCTTATTGCTCCCTACCTACACAATCTCTGTGAATA
AGGCCAACACCAATATATTCGAGAGGCTTTTTACCGAGTTTATCACCAAT
GATTTTGCAACTTTAAGCCAAAAGAACTTGACACCATACCAAACACTGTT
TGCCACGCCAAATCTGTTAGGAAACACAACACTGTGCAACAAAATGTAAA
CGCCTGGGAATAAATTTGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_h18.g1 MSMg01no120_h18.g1 CHROMAT_FILE:
MSMg01no120_h18.g1 PHD_FILE: MSMg01no120_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:56 2005
         (165 letters)



>mm_chr14_85509143_85509707
          Length = 565

 Score =  253 bits (131), Expect = 3e-72
 Identities = 143/147 (97%)
 Strand = Plus / Plus

                                                                       
Query: 19  gaattcaccatggtggtagaattccgccatgactccatgggggtactgggctgtactggg 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 219 gaattcaccatggtggtagaattccgccatgactccatgggggtactgggctgtactagg 278

                                                                       
Query: 79  ccacattttgggtcaattactgaaacacctgaggtctggggcacaaaaggacacctttgg 138
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 279 ccacattttgggtccattactgaaacacctgaggtctggggaacaaaaggacacctttgg 338

                                      
Query: 139 cacaggtctggcctcatcccttgcctg 165
           | |||||||||||||||||||||||||
Sbjct: 339 ctcaggtctggcctcatcccttgcctg 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)