BAC Information

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BAC

Clone NameMSMg01-120P03
Chromosome14 (Build37)
Map Location 16,965,212 - 16,965,673
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc3b, LOC667205, 1700062C10Rik
Downstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120P03.T7 (MSMg01no120_p03.b1)MSMg01-120P03.TJ (MSMg01no120_p03.g1)
ACCAG331185AG331186
length707704
length of high quality
(start - end)
566 (48 - 613)462 (77 - 538)
definitionCHROMAT_FILE: MSMg01no120_p03.b1 PHD_FILE: MSMg01no120_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:34 2005CHROMAT_FILE: MSMg01no120_p03.g1 PHD_FILE: MSMg01no120_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGATCC
GCGGAATTCAACAAGTTCAACTCCAGAAAATCAAATAACCCTATTTAAAA
TGGGGTATAGTGCTAAACAAGGAATTTTCAACAGAGGAATATTGAATGGT
TGAGAAGCACCTAAAGAAATGTTCAGCATCCTTGGTCATCAGGGAAATCC
AAATCAAAACAACCCTGAGATTACACCTCACACCAGTCAGAATTGCTAAG
ATCAAAAACTCTGGTGGCAGCAGATGCTGGTGAGATGTAGAGGAAGAGGA
ACATTCCCCCATTGCTGGTGGGATTGCAGGCTCTTACAACCACTCTGGAA
ATCAGTTTGGCAGTTCCTCAGAAAATTGAACATAGTATTACCTAAGGACC
CAGCTATAACACTCCTGGGCATATAATCAGAAGATGCTCCAACATGCAGT
AAGGACACATGATCCACTATATTCATAGCAGCCTTATTTATAATAGTCAA
AAGCTGGGAAGAACCCCGATATACTTCAACAGAAGATTGGATATAGAAAA
TGTGGTACATTTACATAATGGAGTACTACCTAGCTATTAAAAATAATGAA
TTCATGAAATTTTTAGGCAAATGGATAGAACTAGAAGATATCTTCCTGAG
TGAGGTAGCTCAATCACTAAAGAACACACATGGTATGCACTCACTTATAA
GTAGATA
CCCGATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATTCCCTCTGGGTACTTCCCC
CAACTCTTGCCACAGGACTTTTTGAGCTGTGCCCAAATGTTTGGATGAAT
TTCGGCAAGGGTAAAAGGACCCAAAAACTAGCTCTTTAGTAATTACCTTT
CAGGAAACATGGGGCCAGGCTCAATACGGGATGGGTTCCAAGCAGATGAA
TTAGAATCATTAAGTGCTGTTGCACTGCCAAAAGAAATAGGTTATGGTCC
TTCCTCACAGTGTTGTCCATCTTTGTTCTTTGCACACTTGAGTGCAATGG
CAGAGAGCACCCACAGGTGGTCGCTCAACTTCTACTGTATGATGGGCACC
TATGGGCATTTCCCTTCAGTTTGTGGCATTTACTTCTATCCATAGTTAAA
GGCTCTGGATGTGTCTGTCTTCATTGTTCAGGTGAATAGCAAAGCTCAGA
GATATCAAGCACTTTCCCTACAGCTATCATGGAAACAAATCGTGGTGATA
GAACTCAAGTCTTGAGTTGTCGTATACTCTTAAAATCCTGAGTTTAATTG
TCCACTGAGGTATCCAAATTGTAGGTTTGACAAACTTTCTGTTTCACTAT
CTGAGAGACAGGTTTATGTATACCATGGCTGTTTATATGTAAAACTCCTG
GAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_p03.g1 MSMg01no120_p03.g1 CHROMAT_FILE:
MSMg01no120_p03.g1 PHD_FILE: MSMg01no120_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:34 2005
         (462 letters)



>mm_chr14_16964931_16965792
          Length = 862

 Score =  886 bits (458), Expect = 0.0
 Identities = 461/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttattccctctgggtacttcccccaactcttgccacaggactttttgagctgtgcccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cttattccctctgggtacttcccccaactcttgccacaggactttttgagctgtgcccaa 684

                                                                       
Query: 61  atgtttggatgaatttcggcaagggtaaaaggacccaaaaactagctctttagtaattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atgtttggatgaatttcggcaagggtaaaaggacccaaaaactagctctttagtaattac 624

                                                                       
Query: 121 ctttcaggaaacatggggccaggctcaatacgggatgggttccaagcagatgaattagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctttcaggaaacatggggccaggctcaatacgggatgggttccaagcagatgaattagaa 564

                                                                       
Query: 181 tcattaagtgctgttgcactgccaaaagaaataggttatggtccttcctcacagtgttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcattaagtgctgttgcactgccaaaagaaataggttatggtccttcctcacagtgttgt 504

                                                                       
Query: 241 ccatctttgttctttgcacacttgagtgcaatggcagagagcacccacaggtggtcgctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccatctttgttctttgcacacttgagtgcaatggcagagagcacccacaggtggtcgctc 444

                                                                       
Query: 301 aacttctactgtatgatgggcacctatgggcatttcccttcagtttgtggcatttacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacttctactgtatgatgggcacctatgggcatttcccttcagtttgtggcatttacttc 384

                                                                       
Query: 361 tatccatagttaaaggctctggatgtgtctgtcttcattgttcaggtgaatagcaaagct 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 tatccatagttaaaggctctggatgtgcctgtcttcattgttcaggtgaatagcaaagct 324

                                                     
Query: 421 cagagatatcaagcactttccctacagctatcatggaaacaa 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagagatatcaagcactttccctacagctatcatggaaacaa 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)