BAC Information

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BAC

Clone NameMSMg01-121I24
Chromosome14 (Build37)
Map Location 49,096,279 - 49,096,514
singlet/doubletsinglet
Overlap gene6720456H20Rik
Upstream geneFbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831
Downstream gene4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121I24.T7 (MSMg01no121_i24.b1)MSMg01-121I24.TJ (MSMg01no121_i24.g1)
ACCAG331645AG331646
length916701
length of high quality
(start - end)
---235 (76 - 310)
definitionCHROMAT_FILE: MSMg01no121_i24.b1 PHD_FILE: MSMg01no121_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:22 2005CHROMAT_FILE: MSMg01no121_i24.g1 PHD_FILE: MSMg01no121_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCCCTCACCAGGGGGCGAGATTGTTGGATCTAAACGAGGGGGGGGGG
TAATAATTGACACCATCACTGGGGTGGGTCTATAACAGGACGCTGTGCGT
TCACGGGGCCCGGGCCCCGTACACAGGGGCCCGGGGCACGGGCACAGGGC
ATAAAAGTGGTGTTTTGGCGTGTGGTTGTGTGGGGTTTCCCCTTTTTTGC
CCTTCTATTTGGGTATCCGCGGTGGCTTATCGCCCGCGCCCACCGGTTCC
CTGCCTGTTCCCTGATTTTTTCCCCGTCGGGGGCAACAATCTTTCGGCCT
GGGACGCTGCGAAAGGGAAAAACCGCAACTGGGCTATGGTATACCGCAAC
ACGGTAACGGGGGCCCGTGGGATGAAGGGGTTCCGGGGACCCCCTGGCCT
TGTGCCCCTCTCCTTTCACCTATTTTTTTTTTCCCCGGTTTTTTGTTATT
ATTTGACCTCCCCCTTTTCTAAGGGACATATTGGTGGGTTTTCGGGGCGC
TTGTTTTCTTGTACCCTGGGGGAACTGGGTGGTTGGCGGTCCACCCCCCT
GTGTACGTGTGTTAATATACCGCGGGGGGCGGGGGCGCGGGCACTCCTCC
CCTTTTTTTTCATTCTCTCTCTCCCCCTTTCCACCCTGGTGCTCCCCCTC
TTTTTCCTGTTTGTGTACTCCCCGGGCGCCATTTTTTTCCCCATTCGCCC
CCCGTGGCCCCTCCCTCCGGGGGCATCCGCCCCCCTGGTCTATCTGTTCC
CTGGGAACACCGGGCAACCACACAATGGTTTGCCTCAGTTGGGGCGCTGG
CCATGTGTGGACTCCCCCCACCCCCTGGCCTGCCTGGGTGTGTCCACCTC
GGGGGGGGGGGGATATATAGGGGGCCCCACACTATCTCACATGGGGGGGG
AAAAAAAATAGAACAN
CGATGAAGTGAGAGGCCTGGCGGCGCCTGGTTTCCGAGGGGGGGNGAACT
ATAGAAGGTTACAAGAGTACGAGAGACATTCAGCCTTGTTTGCCTCACTA
AGTGGGCAAGGGGATCCCCTACAAACATCTTAACTGGAAACTACCAACTC
TTTTTCTTACAAAAACAAGAAATCCATCTGAGAGAATGCATATAAGAGGC
AGGACTCAGGACCAGCAGAAGAACAAGCAGCAGAGTTCTCTCTGCATTTT
CAAACAAACATCCTTAATTGAAAATGAAGTGTTCATTGTAGCACTCATCT
CATCTGTGATTTCCACTGCATAAACAAGACCCACAAAAGCGACAGCAGGA
AAGCATATTGATCTCACCTGACGACAGGCGTGGCTGAAGTGTTTACATTC
TGGAGGCACGGCACGCCTATAAAGATGAATTTATAATGACTAGAAGCAGT
TGTTACACTATTTTCCTTTTGCATGAGAAATAAGCAGGGGCAATTACACG
AGGGCTGTTCCAGACAGGCTGGGAGGTCTTCCTTGTTCTGCATTATGCTG
TGATTGCCTGACGGTGTTCAGGTCTCATTGTAAGTGCACATCACCACCTA
AGCATACACACAGTTACTTGCATGCACTAACACCCTCATTACAGAGGTTT
TTTTTGTTCTTCCTTCTGCTATTAAACGAACTGACATATGGGGTGTTGAA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_i24.g1 MSMg01no121_i24.g1 CHROMAT_FILE:
MSMg01no121_i24.g1 PHD_FILE: MSMg01no121_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:23 2005
         (235 letters)



>mm_chr14_49096079_49096714
          Length = 636

 Score =  433 bits (224), Expect = e-126
 Identities = 233/236 (98%), Gaps = 1/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattc-agccttgtttgcctcactaagtgggcaaggggatcccctacaaacatcttaac 59
           |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 436 acattcaagccttgtttgcctcactaagtgggcaaggggatctcttacaaacatcttaac 377

                                                                       
Query: 60  tggaaactaccaactctttttcttacaaaaacaagaaatccatctgagagaatgcatata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tggaaactaccaactctttttcttacaaaaacaagaaatccatctgagagaatgcatata 317

                                                                       
Query: 120 agaggcaggactcaggaccagcagaagaacaagcagcagagttctctctgcattttcaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agaggcaggactcaggaccagcagaagaacaagcagcagagttctctctgcattttcaaa 257

                                                                   
Query: 180 caaacatccttaattgaaaatgaagtgttcattgtagcactcatctcatctgtgat 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 caaacatccttaattgaaaatgaagtgttcattgtagcactcatctcatctgtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space:   141702
Effective search space used:   141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)