Query= MSMg01no122_b15.b1 MSMg01no122_b15.b1 CHROMAT_FILE:
MSMg01no122_b15.b1 PHD_FILE: MSMg01no122_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:12 2005
(736 letters)
>mm_chr14_101397271_101398408
Length = 1138
Score = 1330 bits (688), Expect = 0.0
Identities = 725/738 (98%), Gaps = 2/738 (0%)
Strand = Plus / Plus
Query: 1 ctctaggatattgttttatttatgggaccagcccggggctcgcttctttcttataagtag 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ctctaggatattgttttatttatgggaccaggacggggctcgcttctttcttataagtag 260
Query: 61 atcagatttctgtgctatctgattagcatttgttttcctctc--tttttttttttgctta 118
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 atcagatttctgtgctatctgattagcatttgttttcctctctttttttttttttgctta 320
Query: 119 tgttttgtttccttatgaaagaaatattcctataacatgtatctggtttacaaaatgaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttttgtttccttatgaaagaaatattcctataacatgtatctggtttacaaaatgaaa 380
Query: 179 ccagatgctactctaaagaattatccagaataactactggtaaatttttatttattcacc 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ccagatgctactctaaagaattatccagaagaactactggtaaatttttatttattcacc 440
Query: 239 atccaagatatgactcaggtatccttgtttatgcatttatgaaatgtggataaaaggtca 298
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 atccaagatatgattcaggtatccttgtttatgcatttatgaaatatggataaaaggtca 500
Query: 299 attattgaaaaggatgctaagaacctaaatttaatgctataaatacatcttcatagttct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attattgaaaaggatgctaagaacctaaatttaatgctataaatacatcttcatagttct 560
Query: 359 ttaaactcattggatttctaacctgcttggtgcaagtaccaatagccaaagtgatagctt 418
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 561 ttaaactcattggatttctaacctgcttggtgcaagtaccaataactaaagtgatagctt 620
Query: 419 ttgattttctattagcttgtcaaagtagtatttgtgccccatgtaatacttcatctctac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgattttctattagcttgtcaaagtagtatttgtgccccatgtaatacttcatctctac 680
Query: 479 cttgataaactctacctttcaaagcaagtgaaactcactaaagtagactgaaagggacgc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgataaactctacctttcaaagcaagtgaaactcactaaagtagactgaaagggacgc 740
Query: 539 tgtgatgtgactccccaggtctgaactttgttattctgctgattttacaagtggtaagct 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgatgtgattccccaggtctgaactttgttattctgctgattttacaagtggtaagct 800
Query: 599 taccaggggcgtgctcttgggatgtgacatctccctgtatagtcactctatgtctcttga 658
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taccaagggcgtgctcttgggatgtgacatctccctgtatagtcactctatgtctcttga 860
Query: 659 gtaaaataaatggatagataagtaagtaaaattgtcatctactggagaaggaaaggaaac 718
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 861 gtaaaataaatggatagataagtaagtaaaattgtcatctactggaggaggaaaggaaaa 920
Query: 719 gcccctgctctgacttgg 736
||||||||||||||||||
Sbjct: 921 gcccctgctctgacttgg 938
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1138
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1128
Effective search space: 818928
Effective search space used: 818928
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_b15.g1 MSMg01no122_b15.g1 CHROMAT_FILE:
MSMg01no122_b15.g1 PHD_FILE: MSMg01no122_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:12 2005
(760 letters)
>mm_chr14_101485581_101486737
Length = 1157
Score = 1340 bits (693), Expect = 0.0
Identities = 739/755 (97%), Gaps = 3/755 (0%)
Strand = Plus / Minus
Query: 5 ccccaaagcatcaaaaggcctaccccttgcatgtcttattgcttcttttctgggttcttg 64
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 956 ccccaaagcatcaaaaggcctaccccttgcacgtcacattgcttcttttctgggttcttg 897
Query: 65 attaaatgatcctgatcaaaagactgttccttttatctctcgtgtcctaatgacatactt 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 896 attaaatgatcctgatcaaaagactgttccttttgtctctcgtgtcctaatgacatactt 837
Query: 125 aattttcttttacgcacttcaaaaagaattcttttgtatgaggtgatgtataaaaatccc 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aattttcttttatgcacttcaaaaagaattcttttgtatgaggtgatgtataaaaatccc 777
Query: 185 attagagaattattttaaaagaataaaatctttgacccctgtaaaatttgtggagagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 attagagaattattttaaaagaataaaatctttgacccctgtaaaatttgtggagagaaa 717
Query: 245 agaatttatataaaaaaagactttggcctttagtctacagttgaaaagctgttcagatgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agaatttatataaaaaaagactttggcctttagtctacagttgaaaagctgttcagatgg 657
Query: 305 tttagggcagttgagcttttgcttttatgaggactgattactgcttggactatcttgtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tttagggcagttgagcttttgcttttatgaggactgattactgcttggactatcttgtaa 597
Query: 365 cagagggcataatgatgggcaagtcccccagaaaggaggttgcttctcactgagacggac 424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cagagggcagaatgatgggcaagtcccccagaaaggaggttgcttctcactgagacggac 537
Query: 425 tgctccaagaagacagtcacagctataaatcaaaagttcttcctgtcagagagttctctc 484
|||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||
Sbjct: 536 tgctccaagaagacagtcacagctataaatcaaatgttcttcttgtcagag--ttctctc 479
Query: 485 atttctttgtccccatgtcattccatcttcgctaactcgtcctgagaagggaaattaaat 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 478 atttctttgtccccatgtcattccatcttcgctaacttgtcctgagaagggaaattaaat 419
Query: 545 attctgtaacataacctcctcagcctttaaccatcttagtacataagatctcatactttg 604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 attttgtaacataacctcctcagcctttaaccatcttagtacataagatctcatactttg 359
Query: 605 tttttaccctattggtagtgttatagagccactaatccccaacctataagtcaggcatgg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tttttaccctattggtagtgttatagagccactaatccccaacctataagtcaggcatgg 299
Query: 665 ctcaatatactgttcctctagctccaccagtcactatttctacttttctttgtacagatt 724
|||||||||||||||||||||||||| |||||| |||| |||||||||| ||||||||||
Sbjct: 298 ctcaatatactgttcctctagctccatcagtcattatt-ctacttttctctgtacagatt 240
Query: 725 ttcctacttctgacattttgaattcagtgaagccc 759
|||||||||||||||||||||||||||||||||||
Sbjct: 239 ttcctacttctgacattttgaattcagtgaagccc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1157
Length adjustment: 10
Effective length of query: 750
Effective length of database: 1147
Effective search space: 860250
Effective search space used: 860250
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
