Query= MSMg01no122_d07.b1 MSMg01no122_d07.b1 CHROMAT_FILE:
MSMg01no122_d07.b1 PHD_FILE: MSMg01no122_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:25 2005
(759 letters)
>mm_chr14_81220533_81221691
Length = 1159
Score = 1384 bits (716), Expect = 0.0
Identities = 743/752 (98%)
Strand = Plus / Plus
Query: 4 gttagatgttctgctttaaaaataacaccctaacaaaagacatgtggtgggaaagttaac 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 gttagatgttctgctttaaaaataacacagaaacaaaagacatgtggtgggaaagttaac 263
Query: 64 tacaaatataaaaatactttaaatggaagaaatttgtataactatatgataggcttcagg 123
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 tacaaatataaaaatactttaaatggaagaaatttgtataattatatgataggcttcagg 323
Query: 124 ccacttatcaattatgcatttaaaatactggaagagaaagattacaggtgacacatattc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccacttatcaattatgcatttaaaatactggaagagaaagattacaggtgacacatattc 383
Query: 184 atgtccccaaagcgcagagcacaggacttgaatatagtagatagcaaatatttgttgaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtccccaaagcgcagagcacaggacttgaatatagtagatagcaaatatttgttgaaa 443
Query: 244 atacttcatggaatgcaaaggaggtataagatgcaggttctgcatttgtataacatacaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atacttcatggaatgcaaaggaggtataagatgcaggttctgcatttgtataacatacaa 503
Query: 304 gtctcaggaccagacaaacttagaacaatgagctgaacaacatttataaaatataaaaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtctcaggaccagacaaacttagaacaatgagctgaacaacatttataaaatataaaaga 563
Query: 364 aatgtatctttaaataataaaccataaagtatattttctgatttttagaatcaatagctg 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatgtagctttaaataataaaccataaagtatattttctgatttttagaatcaatagctg 623
Query: 424 agcagaatctaaaagatctgtgtgattttgatttttgcagataagccttgaacttgggct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agcagaatctaaaagatctgtgtgattttgatttttgcagataagccttgaacttgggct 683
Query: 484 cctaagaatggagaatttaaaaaagatagagttggagaaaacagttggataaattaaaag 543
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctaagtatggagaatttaaaaaagatagagttggagaaaacagttggataaattaaaag 743
Query: 544 ttttacaattataagctttgaagtaaattgcaagaatgattatcaacattcatggtgttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttacaattataagctttgaagtaaattgcaagaatgattatcaacattcatggtgttt 803
Query: 604 gattgaacacaattcaaccaaaatgggtgatggtgagatagaatgctttattttgaacta 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gattgaacacaattcaaccaaaatgggtgatggtgagatagaatgctttattttgaacta 863
Query: 664 gctctgtcaaatccataggagctaatatttcaatatattgtactttatccgttcatgatg 723
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 864 actctgtcaaatacataggagctaatatttcaatatattgtactttatccgtgcatgatg 923
Query: 724 gaactagtttctgtcactctgctaaatctatt 755
||||||||||||||||||||||||||||||||
Sbjct: 924 gaactagtttctgtcactctgctaaatctatt 955
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 759
Length of database: 1159
Length adjustment: 10
Effective length of query: 749
Effective length of database: 1149
Effective search space: 860601
Effective search space used: 860601
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_d07.g1 MSMg01no122_d07.g1 CHROMAT_FILE:
MSMg01no122_d07.g1 PHD_FILE: MSMg01no122_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:25 2005
(658 letters)
>mm_chr14_81393034_81394090
Length = 1057
Score = 1108 bits (573), Expect = 0.0
Identities = 639/663 (96%), Gaps = 9/663 (1%)
Strand = Plus / Minus
Query: 1 cctaaactttcctttatatttaacatccttgccttcactagcaactgacttcaatatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cctaaactttcctttatatttaacatccttgccttcactagcaactgacttcaatatata 670
Query: 61 ccgaggcacacctgcggtgccaagcttcaaaataattctggaagcaataaagagtgtctt 120
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 669 acaaggcacacctgcggtgccaagcttcaagataattctggaagcaataaagagtgtctt 610
Query: 121 taattccttggagcctagtaaggagcctggaacatggtaa-tggctcagtaaatggatct 179
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 609 taattccttggagcctagtaaggagcctggaacatggtaact-gctcagtaaatggatct 551
Query: 180 tatcatctaccaatatgatctctgtcctgaccatcattggtttccaacaaggtgaaatcc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 550 tatcatctaccaatatgatctctgtcctgaccatcattggtttccaacaaggtgaaat-c 492
Query: 240 ccccccctttttttccagtttccattaatgggaaatataaagaatgaatatttcaaaaaa 299
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 491 ccccccttttttttccagtttccattaatgggaaaaataaagaatgaatatttcaaaaaa 432
Query: 300 atcaattactatgtccgtgaatctgttaaaatttcctattaaatcatacttcattacata 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 431 atcaattactatgtccgtgaatctggtaaaatttcctattaaatcatacttcattacata 372
Query: 360 aaattattttaaaaattagaatacgcattcttgatttctttttttattcttggaagaatt 419
||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 371 aaattgctttaaaaattagaatacacattctcgatttctttttttattcttggaaaaatt 312
Query: 420 cttagtaattcaggaatcttttttgggcaacagctgtgcagggaaattcattaagttttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cttagtaattcaggaatcttttttgggcaacagctgtgcagggaaattcattaagttttg 252
Query: 480 cacccatagcctacaatctacttcacccaggccaaaatgttctaaaaaaccttctcctgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cacccatagcctacaatctacttcacccaggccaaaatgttctaaaaaaccttctcctgt 192
Query: 540 ttctttttttctttttttttaaattaggtattttcctcatttacatttccaatgctatct 599
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 191 ttcttttttccttttttta-aaattaggtattttcctcatttacatttccaatgcaatct 133
Query: 600 caaaagtcccccatacccctccccccc----actcccctaaccacccactcccacttttt 655
|||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||
Sbjct: 132 caaaagtcccccataccc-tcccccccccacactcccctacccacccactcccacttttt 74
Query: 656 ggc 658
|||
Sbjct: 73 ggc 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space: 678456
Effective search space used: 678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
