Query= MSMg01no122_g15.b1 MSMg01no122_g15.b1 CHROMAT_FILE:
MSMg01no122_g15.b1 PHD_FILE: MSMg01no122_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:50 2005
(673 letters)
>mm_chr14_39548824_39549900
Length = 1077
Score = 1172 bits (606), Expect = 0.0
Identities = 657/678 (96%), Gaps = 10/678 (1%)
Strand = Plus / Plus
Query: 3 aaaaagttccacccataactaaaaagctattcccaattgatggctgctagcagaggtaaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaaaagttccacccataactaaaaagctattcccaattgatggctgctagcagaggtaaa 262
Query: 63 atcacctttcttcaatggagtgtcactgggtatattaagcacactccagggcaggtccta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcacctttcttcaatggagtgtcactgggtatattaagcacactccagggcaggtccta 322
Query: 123 cattcaggaggagttgaaaaacttaagtcagactccatgttttgttcaaaaattgagaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cattcaggaggagttgaaaaacttaagtcagactccatgttttgttcaaaaattgagaag 382
Query: 183 gaatgtagagttgatttagtagatagttgctaaagtagctgagacgaggggaaagaatgt 242
|||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 383 aaatgtagagttgatttagtagagagttgctaaaggagctgagaagaggggaaagaatgt 442
Query: 243 aatcaaaatatattgcttgaaattctcaaaga-----tttttaaaacatgaaaaatgtaa 297
|||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 443 aatcaaaatatattgcttgaaattctcaaagagcaaata---aaaacatgaaaaatgtaa 499
Query: 298 aattctcaagaatcatttatctgtctcactcttcaaaatggtaccactgacacaatttcc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aattctcaagaatcatttatctgtctcactcttcaaaatggtaccactgacacaatttcc 559
Query: 358 caggtgaaaaatcatcggctgaaatttcttttcgagactgaggagagaattccatgtcta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caggtgaaaaatcatcggctgaaatttcttttcgagactgaggagagaattccatgtcta 619
Query: 418 aaatgattaaattgcaaacataaaggcctggctttggtgcccagaacacatacatttaaa 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 aaatgattaaattgcaaacataaaggcctggctttggtacccagaacacatacatttaaa 679
Query: 478 aaaaaa-tcaag-agcattgtaatctcagtgatggggagaagacaggcaggaacttctag 535
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaaaattaaggagcattgtaatctcagtgatggggagaagacaggcaggaacttctag 739
Query: 536 gcatccctttgtcgagccacattcccatcttttcctacccacctgacccatgtggcctct 595
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 740 gcatccctctgtagagccacattcccatcttttcctacccacctgacccatctggcctct 799
Query: 596 aacatgcttcttgatattacagttttgtaattctactgttatctctgtgtagattcattt 655
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aacatgcttcttgatactacagttttgtaattctactgttatctctgtgtagattcattt 859
Query: 656 atgctgtgtgtctgtgtg 673
||||||||||||||||||
Sbjct: 860 atgctgtgtgtctgtgtg 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1077
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1067
Effective search space: 707421
Effective search space used: 707421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_g15.g1 MSMg01no122_g15.g1 CHROMAT_FILE:
MSMg01no122_g15.g1 PHD_FILE: MSMg01no122_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:50 2005
(234 letters)
>mm_chr14_39694007_39694639
Length = 633
Score = 323 bits (167), Expect = 5e-93
Identities = 209/238 (87%), Gaps = 25/238 (10%)
Strand = Plus / Minus
Query: 1 aatgaattagaanagttgtgaaatcaagacagagaatggagctgggagacaactggggtt 60
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 355 aatgaactagaacagttgtgaaatgaagacagagaatggagctgggagacaactggggtt 296
Query: 61 ttactgtttttttaccctactaagtacactagacatcagtgtaagggatattagcttttt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttactg-ttttttaccctactaagtacactagacatcagtgtaagggatattagcttttt 237
Query: 121 agtcagctttctcacttgtgtgaaatagaaacaaagacacacacacacacacacacacac 180
||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 agttagctttctcacttgtgtgaaatagaaacaaagacacacacacacac---------- 187
Query: 181 acacacatacacagaaaaagagagaga------gagacataggcacagacacagacac 232
||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 186 --------acacagaaaaagagagagagagagggagacataggcacagacacagacac 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space: 140400
Effective search space used: 140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
