BAC Information

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BAC

Clone NameMSMg01-122L01
Chromosome14 (Build37)
Map Location 14,750,075 - 14,750,665
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281
Downstream geneThoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122L01.T7 (MSMg01no122_l01.b1)MSMg01-122L01.TJ (MSMg01no122_l01.g1)
ACCAG332482AG332483
length1,1081,093
length of high quality
(start - end)
592 (129 - 720)597 (116 - 712)
definitionCHROMAT_FILE: MSMg01no122_l01.b1 PHD_FILE: MSMg01no122_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:26 2005CHROMAT_FILE: MSMg01no122_l01.g1 PHD_FILE: MSMg01no122_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCCTCTTCTTATACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCCCTGGTAACGTGCCCCTATAAAGACTCCGAAGGCACATTAG
GAATAAAAGAAGTCCCTTTTATAATTGTTAATCACATTTAGATATCCGTA
TATGAGTTCTATAAGCAGGACGGTGCTCTAGGGTCTGAGTTTTTCTATTT
CACCCCTCAGGAAGTCGAATGCTGTCCTATGAGGCACGAACCAAGAGGCC
AGCTGCTGTTTGGCTGTCTCAGTAGTCACCGAAAGGGCTATTTTATTTCA
TCTTGAGTTTCTGTGGAAGTCTTTTAAAGCATGAAGCTAAAAAAAGTTCA
GTACCTGGATCATTTGCACAGTATTTCTGCATTTAACCCTTAAGAGCTTT
TTCTGCCTAGGTGAGAACATTACCACAAGGTGGCAGCAGACACAAGGCTA
TAGTTTAGTCTCAGGCTTCATTGGCTCTCTGAGTAGCTGAGTTCAATAGG
ACTGGGTGCTTAAAAAGAAGGCCTCCGCAGGAAAGCTGAAGAAAGGTATT
TAATTTACTCTGGTTCCTGCGTGTGTACCCATCAATCATCCATATCACTG
ATGTGCATAGCATTTAGCTGAACATCTTATATAAACGCAGCTTTCAACTC
AATACATTTGAGATCGGACGAAATAAACGCACACGATACTGATGATTTTG
GTACGTGAGATTTTGTACAGTTGAATATCTGGGAGAAGAACTTTAGATGG
AACAAGAGGCTGGGAGTATGACTTAAGACCCTCAAGACTCTGGGTTCCAA
ACTCCACACTTATAGAAAAAGCCGTAATAAAATGTATAACATTGAGGTGG
CTATTATGGTGTGTTCCAGGAAGGGTACATCTGAACCTCTTGCTTCCAAC
CCTTGGGGCTTGCGGCCTGGAGCCTCCGTTTACAGTCCCCCTTGAATTTG
GCTCCATTTTTTTTCATTCTTCCCCCAAAATGGGAAAATGGCTTATGGGG
TGGAATTAGCCTTATATTAGGGGCACAAATTTCCCCCCCCAAAAGTAAAA
AAAACCTTCTGTGCCCTTTAATCTCAGGCCCTAGAAATTTTCTTCTTGTG
TATAGCCT
CCATGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTTTAAGACCCACCCGACAATGAGATCTCAGAGTTCAAT
GCCTTCTGGGACCCAAGGTGTGGTGGCATACACCTTTAAGCTGGGCTACA
CCTTCTGCTGGAGGCCTACATAACGACATTTGAAGAAGAGACTCTCTCTC
TTCTCTCCTTCATCTGCTTGCTGTGTGGGACTGAACAACTGCTAGATCAT
TGTTGGGAGTCAGACTGCAGACTCTAAGTCATCAACAAAATCCTTTACTA
TATAGTAAAGACTATATAGACTACCCATAAGTTCTGTAACTGGGAGACAG
AAAGACTGTGGGTTTGGGTTAGAGGCAGGCTTGCAGTTCTGCCATGAGTG
ATGTTTTTGATGTGTTCTTAAATTTGGTTTTCAGGTAATTTACTGAGTAT
TTTTTACATCCAGGCTCATTAGCAAAATTTGTTTGAAAACATCTTTCTTT
GTTGAGCCTTTTATGTAGTTTAGGATCAGGGTGACATCGGCCTCATAGAA
TCAGGTTGACAGTGTTCCTTCAGTATTTTGTGTATTATGTTGAGGAGTAT
TGATATCCGCTCTTCTTTGAAAGTCTGATAGAATTCTGTGCAAAAACTAT
CTGACACTCAGCTTTCTTTTTTGGCTTGGATGGCATTTAAAGTCTGCTTC
TCTTTTCTTACAGGTTATAGAACTGCTTATATAGTTTACTTGATTTTGAT
TGAACTTTGGTAAGCTGTATCTGTCTAGAAAATCAACCATTCATTTAAAT
TTTCCAATTTTTGTGGAAAACCGGTTTTTTAAGTAAAGACCTAATGGATT
TTTTTTATTTCCTCCGCCTTCCAATGGTTATGCCCCCCCCTTTTCCCGAT
TTTTGGTTAAATTTTGGAAAACTGTTTTGGCAATACACTTTTTTTTTTTT
CCGGGCCTCGGTTGAATTTTTTTTTCCAAAAAAACCTTTAAAAATTTTGG
TTGGAATTCCCTTTGGCCCATTGGCCCCCTTTTTTTTCCTCTTCCCAAAA
TTGGAAATTTCCCTTTCCCCCGCATACTCCTGGTAAGTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_l01.b1 MSMg01no122_l01.b1 CHROMAT_FILE:
MSMg01no122_l01.b1 PHD_FILE: MSMg01no122_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:26 2005
         (592 letters)



>mm_chr14_14749875_14750865
          Length = 991

 Score = 1075 bits (556), Expect = 0.0
 Identities = 583/592 (98%), Gaps = 1/592 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatcacatttagatatccgtatatgagttctataagcaggacggtgctctagggtctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 taatcacatttagatatccgtatatgagttctataagcaggacggtgctctagggtctga 732

                                                                       
Query: 61  gtttttctatttcacccctcaggaagtcgaatgctgtcctatgaggcacgaaccaagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtttttctatttcacccctcaggaagtcgaatgctgtcctatgaggcacgaaccaagagg 672

                                                                       
Query: 121 ccagctgctgtttggctgtctcagtagtcaccgaaagggctattttatttcatcttgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccagctgctgtttggctgtctcagtagtcaccgaaagggctattttatttcatcttgagt 612

                                                                       
Query: 181 ttctgtggaagtcttttaaagcatgaagctaaaaaaagttcagtacctggatcatttgca 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 611 ttctgtggaagtcttttaaagcatgaagct-aaaaaagttcagtacctggatcatttgca 553

                                                                       
Query: 241 cagtatttctgcatttaacccttaagagctttttctgcctaggtgagaacattaccacaa 300
           |||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||
Sbjct: 552 cagtatttctgcatttaacccttaagagcaaatactgcctaggtgagaacattaccacaa 493

                                                                       
Query: 301 ggtggcagcagacacaaggctatagtttagtctcaggcttcattggctctctgagtagct 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggtggcagcagacactaggctatagtttagtctcaggcttcattggctctctgagtagct 433

                                                                       
Query: 361 gagttcaataggactgggtgcttaaaaagaaggcctccgcaggaaagctgaagaaaggta 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gagttcaataggacttggtgcttaaaaagaaggcctccgcaggaaagctgaagaaaggta 373

                                                                       
Query: 421 tttaatttactctggttcctgcgtgtgtacccatcaatcatccatatcactgatgtgcat 480
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tataatttactctggttcctgtgtgtgtacccatcaatcatccatatcactgatgtgcat 313

                                                                       
Query: 481 agcatttagctgaacatcttatataaacgcagctttcaactcaatacatttgagatcgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agcatttagctgaacatcttatataaacgcagctttcaactcaatacatttgagatcgga 253

                                                               
Query: 541 cgaaataaacgcacacgatactgatgattttggtacgtgagattttgtacag 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cgaaataaacgcacacgatactgatgattttggtacgtgagattttgtacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 991
Length adjustment: 10
Effective length of query: 582
Effective length of database: 981
Effective search space:   570942
Effective search space used:   570942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)