BAC Information

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BAC

Clone NameMSMg01-123F04
Chromosome14 (Build37)
Map Location 92,697,558 - 92,697,689
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123F04.T7 (MSMg01no123_f04.b1)MSMg01-123F04.TJ (MSMg01no123_f04.g1)
ACCAG332954AG332955
length1,8031,275
length of high quality
(start - end)
---132 (271 - 402)
definitionCHROMAT_FILE: MSMg01no123_f04.b1 PHD_FILE: MSMg01no123_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:54 2005CHROMAT_FILE: MSMg01no123_f04.g1 PHD_FILE: MSMg01no123_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATATTCCTCCNNNNNNGGGTTAATTGTGCCCGCGCATATCACNTCACGT
GATAGTGGAGAGAGATCCCGCGCGCAATTCTCTTGGTATCTTAGATAGCC
CTGACCTTTCTAGCTTCCACTTNTACTAATATGCTACCACTTATTATTAC
TGCTACTCCTCTTCTACAAGCCTGCCCCGGATTAGTCTTGGGCTCGCCTT
TCCACGCCTTCCTGACTCTATTTTTTATACACCTGGCTGACCTATGACTC
ATCCCCCGTCACCATGTCGCTCCCTCGCCTTCACCTATTGCGAGAACCCA
TTATTGCGGTATAGTTCCTCCCGGACGACCAACTAGACTTGGCTGCCCCC
CCCCATTCATTCTGTTCCAACTTTTCTTGACCACCCCTTTCCAATTCGAT
TTACCCCAGTCGCCCCCAACCACCTTCGCAATCCCCGTTCCCACTCGCCA
GAACCTGCTCCTCTTTTCTCCCATACCCTCCCCCTTGCCCACCTCTCGCC
CCTCCTGAGACCCCGATCCCTTTTTTTATTTCTGCACCCGCCTCTGACCC
ATCTCACTCCCCCACGCCACTGGCTTCACGACCTCCGTATTTTTTGTCTT
TCTCCCCCCCCACACCACACCCCCCCCCCCCCCCCCCCCCCCCCAAAAAA
AAAAAGGGGGGGGTGTCTCCTCATTCCCCACCTCCCTCGCTACCCACCCT
GCCTCCCTCTCACCCCCCCTCGTCCCTCCCCCTCTCCTTTCCCACTACCC
CGCTCTCCCCTCGCCCTTCCTCCCCGTACTCCTCTCCCACCCTTTCCCCC
CCTCGCGTCCTTCCCTCCTCCCTCCCCTCTTCCCACCCTCTCCCCCCCTC
CCCCACCCCCCTCCCCCCCCGTCCATCCCCCTCCCTCACCCTCCTCCTTC
CCCCCCTCTCCACCTCTCTCTCCCTCCCGTCCTGCCATCCTCCCCCCTCT
TCCCCCTCACCCCCCCTCCTCCCTCCTCTATCTCCCCCTACGCTCACCTT
TCTCACCCCTCCCTCCTCCTCCCTCCTTTCTCCTCCACTCTCCCCCTCCC
CTCTCCTCTCCTACTCTCCTTCTTCACTCCTCCTCCCCTCCCCCTCACCT
CTTTCTCTCTCCTCTTCCTTCCTACTCTTACCCACTTCCTTCCCTCCCCC
CTCTATCCCCCTCTCTACTCCCTACCTCTTCTATCTCACTCCCCTCCCTC
CCTTCCCCTTCTCCCCTCTCCCCTCTCCTCTCTCCCCCTCCCTACCCCCA
CTCCCTCCCCTCTCCCCTCTCCACCCTCACCCCCTCCTCCCTCCTCCTTC
CTCTCCTCCCCCTCCCCCTCCTCCACTTTCTCACTTTTTAACTCTCCCCT
CACTCCTACCTCCTTGTCCCCCCTCCTCTTTCCCTCTTCCCGCTCCCCCT
CCCACTCCTTCTCATCTCCCCTTTCCTCATCATCCCTCCCCTCCTCTCTC
CTCCTCTCCACATCCTCCCTCCTCCTCCCCTCTCCCCTCTCCCTCCCCTN
CCTACCCCTCCCNCCTCCTCTCATTCCCTCACCATCCTCCCTTCCTCCTT
CCTCCCCTCTCCTCTTCTCCTCTCTCCTCTCCTTCTCCATCCCCCTCATT
CACTCTCCCCTTCTTCTCCCCTCTCTCGTCACTCCCCATCCACTCCCGTC
CTCCACTCCTCCCTCCCTCCCTCTCTCGTACTCTCCCCTCGCCGCCCTCG
ATCACACCTCCTCCTCTCCCCTATCTTCTTGCACCTCNCTCCCTGCTTCC
CAACCTCCGCGCTCACCGACTCCACTTCTCTCTCTCCTCACTCTTCTCCA
CTA
TCCCCTCTATGACCGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCTTAAAACCCCAAAAGGGGAGAAANAGNTTA
GCTTTGCCCCTTTAAATCCCCTTCTTTGTATCCTGGTCCATTAAGACCCA
AGCAAGCTGCTACCTAATGAACTTGTCACATATAATGGGCAATATCCTCT
CAACACTGAGACAAAAAATAAAAAAAAAAAGCAAAAATAACCTACCAACC
CAATAAACAAATAAAAACCAAAAGCTTCTTTAATTTGTTCCTTGACAGGA
TTTTATTTATTTTTATTACCACAGCAAGGAGTAAAGTCACTCAGGTGTAC
TGTAAGTTTGGCAGGTAATATCAAGCAAGTGAACCCATTATACTCTGGGA
AAATGTTACATTTTATTGCCAGAATACAATACCGTGCTTATGCATGTTAC
ATATATAGAAATACACATACTGATAGTGAAAAATAAAATAAGAATATTCA
AAATACATGCCACCTTTGTCCTTTCAGTAAAATAGCGAGAATTTTCTCTT
TCCTATATAGTAAGATAACTGTCCATCATAGAGTCTCCAAGGTCATGTAC
ATAGCATAATACAACAATATATAATAAGTACCCATGTGTTTTGTTTTCTA
CTCCAACAAGCCATTACCTATCCTATAATAAAATATATCTGATGGACAAT
GTACGATTTCTCTCTTCCCCCGCACACTAGTGGCTAAATAAAAAGCTAAC
TTCCCCAAGGAATTTGAAAGTCAAGGATAAATTCCACTATGAAAAGTAAA
AATGCTTCTCCAGGTCTCCCTTTCTACTGTCCCTTCAAAATGAATTTTGC
TCCCGGCACAAACATGTCCTTTAAACCATGCCCTGATTCCAAAAAACTCA
TTAAAACCCCCACTTAGGATTATAATCTGATCCTGCCGCTTTACCCTAAA
ATAGCCCCCTCTAAACTCCCCAACTTGTTTTGGTGCCCTAAAGCCTACGG
TCCCCCTTATTTTTGGTAAACCCCTTTCGGGAAACAACTTATCTCAGCAC
TTTTTCTTGTCTTGTCCCTCTTTTTGCTCTCAAATTCTCCCCTTGACACC
CCCACATTTCTCTGCTGGAAACTCCTTCCCGGGAAAAAATACACCCCTTG
TTTGTTTTAGATTAAAACTTGTTTCTTGGCAAGAATAAACACCGCTTGCG
GGCCTCTTCTTTCATACCTTATCTCCCCTCAATGGGCCGGTTTCCTATCT
CACAACAATAACTTCTTTATCGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_f04.g1 MSMg01no123_f04.g1 CHROMAT_FILE:
MSMg01no123_f04.g1 PHD_FILE: MSMg01no123_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:54 2005
         (132 letters)



>mm_chr14_92697358_92697889
          Length = 532

 Score =  255 bits (132), Expect = 6e-73
 Identities = 132/132 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagcttctttaatttgttccttgacaggattttatttatttttattaccacagcaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaagcttctttaatttgttccttgacaggattttatttatttttattaccacagcaagga 273

                                                                       
Query: 61  gtaaagtcactcaggtgtactgtaagtttggcaggtaatatcaagcaagtgaacccatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtaaagtcactcaggtgtactgtaagtttggcaggtaatatcaagcaagtgaacccatta 213

                       
Query: 121 tactctgggaaa 132
           ||||||||||||
Sbjct: 212 tactctgggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)