Query= MSMg01no123_o24.b1 MSMg01no123_o24.b1 CHROMAT_FILE:
MSMg01no123_o24.b1 PHD_FILE: MSMg01no123_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:20 2005
(420 letters)
>mm_chr14_39173951_39174769
Length = 819
Score = 704 bits (364), Expect = 0.0
Identities = 394/404 (97%), Gaps = 1/404 (0%)
Strand = Plus / Plus
Query: 17 gaattctcatttagaaatgagccagtaaattggtgtgttagatggaatgttcagtctttg 76
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 217 gaattctcatttagaaatgagccaggaaattggtgtgttagacggaatgttcagtctttg 276
Query: 77 tgtgcttaaatggttttacattggtcctagttaagtagtacatgatctctttgctttgtg 136
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgtgcataaatggttttacattggtcctagttaagtagtacatgatctctttgctttgtg 336
Query: 137 tgactattctcaagaacttgtatttagtacaagggaggagaaatgaatcttggttatttc 196
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 337 tgactattctcaagaacttgtatttagta-aagggaggagaaatgaatcttggttatttc 395
Query: 197 ctccaaggaacacatggttaacacatttctaattttggattgatggcagataaatataag 256
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 396 ctccaaggaacacatggttaacacatttctaatcttggattgatggcagataaatataag 455
Query: 257 ttcataatcacatttggacaatttaggctattgagttgaatgggtaaatgttaccctaca 316
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 456 ttcataatcacatttggacaatttagtctattgagttgaatgggtaaatgttaccataca 515
Query: 317 gctgtgactcttgtcatgttttgcccatcctctgatggcaacagcaatgtttgtagctgt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 516 gctgtgactcttgtcatgttttgcccatcctctgatggcaacagcaatgtttgtatctat 575
Query: 377 ggttatgactgtcacatgatcctttgtgtctccattctgaaaca 420
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 576 ggttatgactgtcgcatgatcctttgtgtctccattctgaaaca 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 819
Length adjustment: 9
Effective length of query: 411
Effective length of database: 810
Effective search space: 332910
Effective search space used: 332910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_o24.g1 MSMg01no123_o24.g1 CHROMAT_FILE:
MSMg01no123_o24.g1 PHD_FILE: MSMg01no123_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:20 2005
(636 letters)
>mm_chr14_39258305_39259340
Length = 1036
Score = 721 bits (373), Expect = 0.0
Identities = 394/401 (98%)
Strand = Plus / Minus
Query: 236 ctcttttaagaattctctttgttttttcttagcatagtgcctcattcctttgcctggctg 295
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ctcttttaagaattatttttgttttttcttagcatagtgcctcattcctttgcctggctg 977
Query: 296 cataatatttctctgtattggtggtccactgtttatccattcacctaataaaagaatgtc 355
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 976 cataatattcctctgtattggcggtccactgtttatccattcacctaataaaagaatgtc 917
Query: 356 tcagtaacttaaagatctgagtgcctttgaatatagctgctatatatattaacatgaaaa 415
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tcagtagcttaaagatctgagtgcctttgaatatagctgctatatatattaacatgaaaa 857
Query: 416 ttcttgagtggggtataagtgtggagcaaattgaataatcaggaataatttatagatgga 475
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 856 ttcttgagtggggtataagtgtggagcaaattgaataatcaggaataatttacagatgga 797
Query: 476 ataaatgttttatgtgaaactagcgcactttgtccctaggtaactaaattattttatatt 535
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 796 ataaatgttttatgtgaaactagcgcactttgtccctaggtaaccaaattattttatatt 737
Query: 536 gctgaaaatgactaagagcctctgtctattccatataaggtgctctttcaataattttaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gctgaaaatgactaagagcctctgtctattccatataaggtgctctttcaataattttaa 677
Query: 596 tatattgtagtagtatcatattgtagtttgaatttctagtt 636
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tatattgtagtagtatcatattgtagtttgaatttctagtt 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
