BAC Information

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BAC

Clone NameMSMg01-124A02
Chromosome14 (Build37)
Map Location 71,682,481 - 71,823,018
singlet/doubletdoublet
Overlap genenone
Upstream genePpp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC100043136, LOC668477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124A02.T7 (MSMg01no124_a02.b1)MSMg01-124A02.TJ (MSMg01no124_a02.g1)
ACCAG333468AG333469
length1,3031,217
length of high quality
(start - end)		298 (67 - 364)645 (122 - 766)
definitionCHROMAT_FILE: MSMg01no124_a02.b1 PHD_FILE: MSMg01no124_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:30 2005CHROMAT_FILE: MSMg01no124_a02.g1 PHD_FILE: MSMg01no124_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,682,481 - 71,682,778)(71,822,438 - 71,823,018)
sequence
AAAACCCNNNGGAACAATGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCACTGGCCTAAAGCCACCTTCTTTATGAAGCCACACCCAGTG
CTTTCAGTCCGCGATGCCCAGTTTTTAGTCCATAAGTAGTTATCAAGCTA
ACTGCTAGGAGCTGCGTTCTGTGCAGAAAAGAATGGCTGAACAAAATGTA
AATCAGTATGTTTGATCTTGTGGGCTTGGATTCCAGCGTGAGAGAGAAGC
CAGAGGCAAAGGATAAGTAGATTATATAGTTTTACATTAAGTCTTCGAGA
AAATTATAAATCAGAGGGAAGGGCAATCAAAGAAAGGGGGTTATAATTAC
AAAAGAGCATTCTGCTGCTTCAGTGACGACAAAGGTGTCTGTAGTACTTT
CAAACAAGGTCGGAGGAAGAGAGAAAGCCACTGGACCTGGCTTGGGATTT
TGAAACCTCTTTTTTTTCCCCCCCCACACACTTTTGCCCCCCCCCCCAAA
AAAAGGGAGCCTTCCCACCAGTTCGAATCCATGGTGACCAAGTATGCAAC
TATATGAGTCTAGGGGAACCATTCTTATTTAACACACCCCACTATCTAAT
GAATTGTGCAAGGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGACA
CAGAGAGACAGAGCGAGAGAGAGAGAGATAGACAGATAATACCTTCCCTT
GTCCCTCACTTCCTCCCCCTCTCCTCATCCCTTTCCATCACCTCGCTAGC
CCGCACCCCCCCCTCCTCCCCTACGCTCTCTACACTGCTTCCTTCCACGT
TATCGTCTCTTCCCTTCTCCCCTCCCCTCGGCCTTTCCCTTTCTCTCCCT
CCTCTATCAGTTAATTTTCCCTCCATCTGCCCACCGCTCCCACCCCTTAT
TTCCCCTTCCTCTCCCCCTCCCCCTCTTCCCCCCTCCACCTACTCCTTAT
CCCCTTCCCTCACCCCTCCTCACCTCTCCAACTTCCCCTTCCCTCTACCC
CCCTCTTCTCTCTCTTCCTCTCCCGCTTTTCCTATTATATTTTTCTTCTC
TCCTCCTCCCTCCCCTCCCCCTTATTCTTTCCCTCTCCTCCCCTCCTGCT
CACCCCTTCACTTCCCTCTCTTTCTCCCAACCTACTCCTCTCTCCCTCTC
CACCCCTCCCTTCCTTCACCTCTCTCCCATCCTCCTCTCTCCCACTTCAC
TTTCCCCTTCCTATACCTTCTCACTCTACTCCTTCTCTTTCTCCTCTCTC
CTCCTCCTCTCCCTCTCCTCACAGTNCTCTCTCTCTCTTCCTCTCTCCTT
CTA

TTTTTTGAGATGGTAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTCTTAAATTTTTCCCCAAGTTGATCTGTG
ACAGGATACTGCTTTAAGGATTCAAGAAAAGCATTTTGAGGATTATTGAT
CCAGGTCGGAGTCTGGTATTGCTAGTCAGAGATACTAAATGCAATGCTAA
TTAGATACCCCATTACACCTAAATTTAGAGAAGTCAGGTAATAAAAATAT
GGGAAATGTGTGTTCATCAGCTTTGAATAGCAGAAGGAAGGAGCTCTACT
GCACTAACAAACTACAGTGTAGTCTTACTATTTGGATCCTGCAACCTGGA
AGATCATGTGGTGCTGGAAATATCTATGATGGAGGAAAATGCAAGATGGA
GTGTGTAGGAAGAACAGAGGACAAATCATATGATCCTGGGATTCTAGACC
AAGGTTATGCCAACTACAGTCAAGGATTATGCATCTTTTAAGAAAATTGT
TCCTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTACAGGCCCCTTT
ATCTCCTTGGGTACTTTCTCTAGCCCCTCCATTGGGGGCCCTGTAATCCA
TCCAATAGCTGACTGCGAGCATCCACTTCTGTGTTTGCTAGTCCCCGGTA
TAGCCTCACAGGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCT
AGAAAATGGCCTAATCGGCCATCAGTGAAAAATGAGGCCCATTGGTCTTG
CAAACTTTATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGTA
GTGGCTGGTTAGGGGAGTGTCTTATTCTCCTTCTTTTTCTTTTTTTCTCT
TCCTCTCTTTTCTCCCCTCCACTCTTCTTTTTCCTTTTTCTTTCCTCTCT
TTTTTTACCATTCTCTTTTCTCTTATTCATTCTTCTACTTCCTTTCTTTT
CTTTCCTCTCTCTTCTAATTTTCTCCTTCCTATCTCTTTTCCTTCCCCTT
TTTTCCCTCTTCCTTCTCTTCTTTCTTTTTTCTATTTTTCCCTCACTCTC
TTCCTCTCTTTCTCTCTTTTTCTTTTTTGCTTTCCAACTCATCTCTCTTC
TCCTTCTCTTTCTCTTCTTCCCCCCTTTTTTTTCATCTTCTTAACCTCTT
CCCTTCTTCGCTTTCTTCATTTTCTCCTCCCACTCTTCTCTTCTTATTTC
TTCATCTTCTTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_a02.b1 MSMg01no124_a02.b1 CHROMAT_FILE:
MSMg01no124_a02.b1 PHD_FILE: MSMg01no124_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:30 2005
         (298 letters)



>mm_chr14_71682281_71682978
          Length = 698

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagccaccttctttatgaagccacacccagtgctttcagtccgcgatgcccagttttt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 taaagccaccttctttatgaagccacacccagtgctttcagtcagcgatgcccagttttt 260

                                                                       
Query: 61  agtccataagtagttatcaagctaactgctaggagctgcgttctgtgcagaaaagaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtccataagtagttatcaagctaactgctaggagctgcgttctgtgcagaaaagaatgg 320

                                                                       
Query: 121 ctgaacaaaatgtaaatcagtatgtttgatcttgtgggcttggattccagcgtgagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaacaaaatgtaaatcagtatgtttgatcttgtgggcttggattccagcgtgagagag 380

                                                                       
Query: 181 aagccagaggcaaaggataagtagattatatagttttacattaagtcttcgagaaaatta 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtcagaggcaaaggataagtagattatatagttttacattaagtcttcgagaaaatta 440

                                                                     
Query: 241 taaatcagagggaagggcaatcaaagaaagggggttataattacaaaagagcattctg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatcagagggaagggcaatcaaagaaagggggttataattacaaaagagcattctg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no124_a02.g1 MSMg01no124_a02.g1 CHROMAT_FILE:
MSMg01no124_a02.g1 PHD_FILE: MSMg01no124_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:30 2005
         (645 letters)



>mm_chr14_71822438_71823482
          Length = 1045

 Score = 1093 bits (565), Expect = 0.0
 Identities = 577/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaagaaaagcattttgaggattattgatccaggtcggagtctggtattgctagtcagag 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 581 tcaagaaaagcattttgaggattattgatccaggtctgagtctggtattgctagtcagag 522

                                                                       
Query: 61  atactaaatgcaatgctaattagataccccattacacctaaatttagagaagtcaggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 521 atactaaatgcaatgctaattagataccccattacacctaaatttagagaaatcaggtaa 462

                                                                       
Query: 121 taaaaatatgggaaatgtgtgttcatcagctttgaatagcagaaggaaggagctctactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 taaaaatatgggaaatgtgtgttcatcagctttgaatagcagaaggaaggagctctactg 402

                                                                       
Query: 181 cactaacaaactacagtgtagtcttactatttggatcctgcaacctggaagatcatgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cactaacaaactacagtgtagtcttactatttggatcctgcaacctggaagatcatgtgg 342

                                                                       
Query: 241 tgctggaaatatctatgatggaggaaaatgcaagatggagtgtgtaggaagaacagagga 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 341 tgctggaaatatctatgatggaggaaaatgcaagatggagtgtggaggaagaacagagga 282

                                                                       
Query: 301 caaatcatatgatcctgggattctagaccaaggttatgccaactacagtcaaggattatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caaatcatatgatcctgggattctagaccaaggttatgccaactacagtcaaggattatg 222

                                                                       
Query: 361 catcttttaagaaaattgttcctggttagttcatattgttgttccacctatagggttaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 catcttttaagaaaattgttcctggttagttcatattgttgttccacctatagggttaca 162

                                                                       
Query: 421 ggcccctttatctccttgggtactttctctagcccctccattgggggccctgtaatccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ggcccctttatctccttgggtactttctctagcccctccattgggggccctgtaatccat 102

                                                                       
Query: 481 ccaatagctgactgcgagcatccacttctgtgtttgctagtccccggtatagcctcacag 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ccaatagctgactgtgagcatccacttctgtgtttgctagtccccggtatagcctcacag 42

                                                    
Query: 541 gagacagctatatcagggtcctttcagcaaaatcttgctag 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  gagacagctatatcagggtcctttcagcaaaatcttgctag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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