BAC Information

Click to search

BAC

Clone NameMSMg01-124G22
Chromosome14 (Build37)
Map Location 87,986,381 - 88,090,496
singlet/doubletdoublet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124G22.T7 (MSMg01no124_g22.b1)MSMg01-124G22.TJ (MSMg01no124_g22.g1)
ACCAG333789AG333790
length1,2311,221
length of high quality
(start - end)
356 (44 - 399)647 (122 - 768)
definitionCHROMAT_FILE: MSMg01no124_g22.b1 PHD_FILE: MSMg01no124_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:31 2005CHROMAT_FILE: MSMg01no124_g22.g1 PHD_FILE: MSMg01no124_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,090,179 - 88,090,496)(87,986,381 - 87,987,027)
sequence
GGCCGGGGACATTGGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTAATGGATCAAGACTAATCTAGGTGTTGTTGTGAAAGTATTTTTAAGAG
TAAAAACCATTTACAGTCAGTAAATCTGAGTAATTCCTTTATAATAGGGA
TAGGGTAAGCCTATTAACAGAAGAACTTTAGACCCAAACCAAAGCTATGC
AAAAGGAACAAATCCTACCTGAGTTTACACTCTGCTGGCTCAGCTTGTAA
ATGCAAAACTTAAGACCACCATCAATTCTCAGATGAGTTCTGAATATTTT
GAAGTTCCCACAATTGCATGAAACAAAGTTCTGTTTCTCTAGAGAACCCT
TAATATGCCACAATTTCCCCTAATGTTTCTTTGTAGGCCTACTTACATAA
TGTATTGAGGAGGAAGGAGAAAGAAGAGAAAGGGAGGAATGTCCTTGTTA
AATTTTTTTCCCCCCCCCCCCTTGATAATGCACCGTATACATAAAAGAGG
CTACCACAGACCAAGCAACAAAAAATTAGCTTCTTTCAGGGTTAAACAGT
AACCTAAGAAAACCTTTTGGCATACATAAGAGCATATACACTAGGTAGAA
ATTTCCCTGTCCTCAGATTTAGTTGACAGCCCTAAACTTGAGGAGAAAGG
CTGTAAAGTATGCCAAGGAGATATGCTGAAGCACCTCTTCGTGATTTGCG
AGAGCTGGTCCAAAGTCCGTTATGCAAATACACCCCTCACCACTCACCCC
TTACCCCTCGATCAGGAGATCTATGGGCAAAACCTGCTGAAGTAAGAATA
CTTTATAGAAGAGTCATATAAGTGATGCATGCTGGGCATTTTTCTCTCAC
CGCCCTGCTACCCCTAGCCCAATCTAAAGGCCTCCAAGGAAACCCTTTCG
TGCGGGTCCCCATTAATCTCTAATGGAAGGCCCAAAAGCCAATATGTGAT
AAACCCCAAGGGGGGCGAAGTACCCACCCTTAACTTGAAGCAAACGGGGC
TTTCGCCGGTAGGCGGCCTAATCTTTCCAAAACCTTATCTGTCCCGGGTG
GCAAAAATTTTTCCACTTAGCTTTCAATTAATGCTATTCACACTTGGTTC
CGGGTCCTGCGTTGGTCCTATGCCGTCATTCTCCCCACAACACCTTCTTT
GACCCCCGGTCCTTACCGCTAGAGAACGTGGCTTTACTATCACCCTGTGT
ACAGTGGGTCTCACTTCTTCTTTATCTTTTA
TTTTACAGAGTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTATGTTTAGCTCTGAGCCCCATTTTTTA
ATGGGATTACCTTATTTTCTGTAGTCCACCTTCTTGAGTTCTTTTTTTGT
TTGTTTGTTTATAGAATAATTTTATGAGTTTCATAAAACCACAAACTGAC
AAACATGAAGATGTTAACATTGCTGTGTGCTGAAGCTACAAGTGTACATA
ATTTTTTTTTTAAAAATTAAATAGCACTTGAGTAGAATCTCTATTCTTTT
TTAAAAATTTTTAATATTTTTTATTATGTATTTTCCTCAATTACATTTCC
AATGCTATCCCAAAAGTCTCACATACCCTCCCCCCCACATCCCTACCCAC
TTATTCCCATTTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAA
AGTTTGTGTGTCCAATGGGCCTCCTTTTCCAGTGATGGCCGACTAGGCCA
TCTTTTGATATATATGCCGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAG
TTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGG
CTACTTTCTCTACCTCCTCCATCGGGAGCCCTGTGATCCATCCACTAGCT
GACTGTGAGCATCCACTTCTGTGTTTGCTAGCCCCTGGCATAGTCTCACA
ACAGACAGCTATATCTGGGTCCTTTCAGGAAAATCTTGCTAGTGTATGTA
ATGGTTCAGGGTTTGGAAGCTGATTATGGGGTGGATCCCTGGATATGGCA
GTCTCTAGATGATCCATCCTTTCGTCACAGCTTCTAATTTTGCCTCTGTA
ACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAAAAGGCGCCCAGTGTC
CACACTTTGGGCCTCATTTCTTCTTGAATTTTATGCATTTACCAAATTGT
AACCTTATATCCTGCGAATCCTAAAGTTTTTGGCTTAATACCCCCTTATA
CATGAATTACTTATTTGGGAAATTCCTTTGTGAATTAATGTTATCCCTCC
TCCAGGAGTAAGCCCCCCCTAGCCCCATCCCTTTTGGGTTAAGAATTTTT
CTCAATTTTCCTTCTTTTTTTAAAAGCTCCGCCCGTATTTTCATTTGTGT
AATAGGTTTCCACATTTTTTTGAGCGCCATCTCCTCTGTTTTAGTCTGCT
AATCCTGTTTCTTTTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_g22.b1 MSMg01no124_g22.b1 CHROMAT_FILE:
MSMg01no124_g22.b1 PHD_FILE: MSMg01no124_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:31 2005
         (356 letters)



>mm_chr14_88089741_88090496
          Length = 756

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 35  tgttgtgaaagtatttttaagagtaaaaaccatttacagtcagtaaatctgagtaattcc 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tgttgtgaaagtatttttaagagtaaaaaccatttacagtcagtaaatctgagtaattcc 697

                                                                       
Query: 95  tttataatagggatagggtaagcctattaacagaagaactttagacccaaaccaaagcta 154
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 696 tttataatagggatagggtaagcctattaacagaagaactttagaaaaaaaccaaagcta 637

                                                                       
Query: 155 tgcaaaaggaacaaatcctacctgagtttacactctgctggctcagcttgtaaatgcaaa 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgcaaaaggaacaaatcctacctgagtttacactctgctggctcagcttgtaaatgcaaa 577

                                                                       
Query: 215 acttaagaccaccatcaattctcagatgagttctgaatattttgaagttcccacaattgc 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acttaagaccaccatcaattctcagatgagttctgaatattttgaagttcccacaattgc 517

                                                                       
Query: 275 atgaaacaaagttctgtttctctagagaacccttaatatgccacaatttcccctaatgtt 334
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 516 atgaaacaaagttctgtttctctagaaaacccttaatatgccacaatttcccctaatgtt 457

                             
Query: 335 tctttgtaggcctactta 352
           ||||||||||||||||||
Sbjct: 456 tctttgtaggcctactta 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no124_g22.g1 MSMg01no124_g22.g1 CHROMAT_FILE:
MSMg01no124_g22.g1 PHD_FILE: MSMg01no124_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:32 2005
         (647 letters)



>mm_chr14_87986181_87987227
          Length = 1047

 Score = 1205 bits (623), Expect = 0.0
 Identities = 641/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtccaccttcttgagttctttttttgtttgtttgtttatagaataattttatgagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtccaccttcttgagttctttttttgtttgtttgtttatagaataattttatgagttt 260

                                                                       
Query: 61  cataaaaccacaaactgacaaacatgaagatgttaacattgctgtgtgctgaagctacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaaaccacaaactgacaaacatgaagatgttaacattgctgtgtgctgaagctacaa 320

                                                                       
Query: 121 gtgtacataattttttttttaaaaattaaatagcacttgagtagaatctctattcttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtacataattttttttttaaaaattaaatagcacttgagtagaatctctattcttttt 380

                                                                       
Query: 181 taaaaatttttaatattttttattatgtattttcctcaattacatttccaatgctatccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaatttttaatattttttattatgtattttcctcaattacatttccaatgctatccc 440

                                                                       
Query: 241 aaaagtctcacataccctcccccccacatccctacccacttattcccattttttttggcc 300
           ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 441 aaaagtctcacataccctcccccccacttccctacccacccattcccattttttttggcc 500

                                                                       
Query: 301 ctggcgttcccctgtactggggcatataaagtttgtgtgtccaatgggcctccttttcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggcgttcccctgtactggggcatataaagtttgtgtgtccaatgggcctccttttcca 560

                                                                       
Query: 361 gtgatggccgactaggccatcttttgatatatatgccgctagagtcaagagctctggggt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gtgatggccgactaggccatcttttgatatatatgcagctagagtcaagagctctggggt 620

                                                                       
Query: 421 actggttagttcataatgttgttccacctatagggttgcagatccctttagctccttggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actggttagttcataatgttgttccacctatagggttgcagatccctttagctccttggc 680

                                                                       
Query: 481 tactttctctacctcctccatcgggagccctgtgatccatccactagctgactgtgagca 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tactttctctagctcctccatcgggagccctgtgatccatccactagctgactgtgagca 740

                                                                       
Query: 541 tccacttctgtgtttgctagcccctggcatagtctcacaacagacagctatatctgggtc 600
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccacttctgtgtttgctaggccctggcatagtctcacaacagacagctatatctgggtc 800

                                                          
Query: 601 ctttcaggaaaatcttgctagtgtatgtaatggttcagggtttggaa 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctttcaggaaaatcttgctagtgtatgtaatggttcagggtttggaa 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)