BAC Information

Click to search

BAC

Clone NameMSMg01-125K21
Chromosome14 (Build37)
Map Location 39,192,453 - 39,192,638
singlet/doubletsinglet
Overlap geneNrg3
Upstream geneLOC382871, LOC382872
Downstream geneLOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125K21.T7 (MSMg01no125_k21.b1)MSMg01-125K21.TJ (MSMg01no125_k21.g1)
ACCAG334705AG334706
length700724
length of high quality
(start - end)
295 (57 - 351)39 (260 - 298)
definitionCHROMAT_FILE: MSMg01no125_k21.b1 PHD_FILE: MSMg01no125_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:48 2005CHROMAT_FILE: MSMg01no125_k21.g1 PHD_FILE: MSMg01no125_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTAAACGACTCCTATAGTCCGAGGATCCGCGGAATTCCCATGGAAT
TTGCCTTTTACTTTCACTGGACCTATGGAAGCTGCATTTATTACAAAAGT
TAAGCCCTAAATTGTTAGCCTTTTAAAGGGCAAAAAAGAAATTTCCAAAA
CAGTATTTTCCCCAGTTGTTAGCATTTTAAAGGGCAAAAAAGAAATTTCC
AAAACAGTATTTTCCCCAGTTTATTCTGAAACATGTTACTATAGTTATCT
ACTCTGTCCTATAAAATAGTATAATATTACGCTGTAGCATATTATGCCAA
AATTATTTTGAATTTGTGATTTTTAAGTGGTGGCTTCTGCCATGTTGGAA
CTTTATTATTAACGCCCCCCCCCCACATTTTTTTGTCCATATCCCAGCCT
TGAATTTGATCCTGAGAAAAAAAAATCCAAGATTAGGTGAGGGCGTCTTT
AAAGGAACTTCCAGGTTGTTTCGCTGTTGATGATGTTTGTCGCGCTGTCT
TTGATTCTACGACATTGCAGTATCTGATGGCCATGTGCTGAAAGATTGCC
CAGGCTCGATTTATAGAGTACTTTTAGAACCTGCACTTACAGTCTATTCC
CTTATGGCTTTTGCCCTGTAAAACCTGTCCCATATTAACCCGCCTCCCGA
TTGATACCCCTTTTTACCGAACCAAATTTCCATCCCCCCCCTGTCAAACT

AATATCCCTAATCGATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATTTTGCTCTC
ATAAAATGGTTTATTTCTGCTAAGTTCTGGCATCAAGCGTCCACAGAACT
GCCTTGGGCAAATTGAGACAGTTGGCCAAAATTTTCAAAATTGGCTGATT
TTGAGATTCAACTGCATTTTTCCCTACATATTTAACACCTTTTCATAGTA
ACTATGGCCTCAAAACACATGACAGCCAGTTCTGCAAAGAAAGAACTTTC
CGGATGAATTCCCTATTAGACAAAAAGCAAATTTGATGTATTGATTATTC
TTAGGCAATCCATATCCTCCAAATATTTTTTTTTAGACCCCCCCCCCCTC
TATTATTACCAATAACCAGACATATCAAATGCTATGCTTCAATCAAAAAA
AACACTTCGGAGGGGCGAGCATCTTTAACGACCTAAAGAATCTCCTCCTC
TGTAATAACCGCCATATTACCCATCTGACACTAATGATCTCCCTCCCCCG
TAACCGTCACCCCCCACACCCCATTCTGGAAAAACTATCCCCCCCCCACA
CGCCCCTGCCTGAATTTGACCCCATATATCTCCCCAGCCCCCACCCTTTG
CCCCCCCCGTTTTTGCTCTCCCTCACCCCTTATCCCCTTTCCCTACCACC
TTCCCTGCACCAGTCTTACACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_k21.b1 MSMg01no125_k21.b1 CHROMAT_FILE:
MSMg01no125_k21.b1 PHD_FILE: MSMg01no125_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:48 2005
         (295 letters)



>mm_chr14_39192144_39192838
          Length = 695

 Score =  344 bits (178), Expect = 3e-99
 Identities = 184/186 (98%)
 Strand = Plus / Minus

                                                                       
Query: 110 ttgttagcattttaaagggcaaaaaagaaatttccaaaacagtattttccccagtttatt 169
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttgttagccttttaaagggcaaaaaagaaatttccaaaacagtattttccccagtttatt 436

                                                                       
Query: 170 ctgaaacatgttactatagttatctactctgtcctataaaatagtataatattacgctgt 229
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 435 ctgaaacatgttactatagttatctattctgtcctataaaatagtataatattacgctgt 376

                                                                       
Query: 230 agcatattatgccaaaattattttgaatttgtgatttttaagtggtggcttctgccatgt 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agcatattatgccaaaattattttgaatttgtgatttttaagtggtggcttctgccatgt 316

                 
Query: 290 tggaac 295
           ||||||
Sbjct: 315 tggaac 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)