BAC Information

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BAC

Clone NameMSMg01-125O17
Chromosome14 (Build37)
Map Location 52,624,933 - 52,625,179
singlet/doubletsinglet
Overlap geneE130112L23Rik
Upstream geneRnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
Downstream geneZfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125O17.T7 (MSMg01no125_o17.b1)MSMg01-125O17.TJ (MSMg01no125_o17.g1)
ACCAG334877AG334878
length702763
length of high quality
(start - end)		250 (33 - 282)103 (148 - 250)
definitionCHROMAT_FILE: MSMg01no125_o17.b1 PHD_FILE: MSMg01no125_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:06 2005CHROMAT_FILE: MSMg01no125_o17.g1 PHD_FILE: MSMg01no125_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTCGAC
CTGGCAGAGATGAATCTTCTGGGAGAGTTGGGATGAGAAGAGTAGTGGGT
GTCCGCAGAGCAGTGTCCCGGGGGTGTGCAGTAGCACAGCAAGGGGACAT
TTCCCTGCCCTCGGAGCATAAAGGCAATTGAACAGGGCCACTCCGGTTCC
TGCAGCAAAAGGCACCAAGCAGGGGAGAGCTAGACAGTGGTGGCAGGGGA
AGCTCTGGTCCCCGCCCACCTCTCTGTCCAGGAAGCAGAGGGAGGGAATC
GAGAGCTTATTTTCTTCATTATGTCCCATTGGCAATCGAGAGAAAAATTT
GGTGAGTTCCCGATCGGGACCCGGATTTTTTTTGGAATGTAGGAGAGAAG
AGGGAGATGGAAAAAGGCACCACAAAATGCTGGGGCGCGAGGCGGGTTAA
CTTACAAGTAACGCTCTTACCCTATGGTATGTGGTAAAAAAGGGCGCCGA
CTCACTTAACTTACATAGGCCGTGACCGCTCCCATTCCTGGTTTCCCCAA
TGACTCCCGCCCCCCCCCTTTCTCCACTGACCCCCCACACTGTCCCCACC
GCATGCCTCCACCCCACGCTTTCCCAATTTCCTTTTCATCTCCCCCCCCT
ATCCTCTCCCAATTTATCCTCACCTATAATCACATATGTCAATCCTCACA
AC

ATGCCACAAAATATCTATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAACTGGG
GTTACAGATGATTGTTAGCTACATGGGAACTAGGAATGACCCCCAGGTCC
TCTGCAAGAGCAGTCCGTGTTCTTAACTGCTGATCTCTCTCTCTACCTCT
ATTTTTTTAATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTCTAAACATACTATTCCATTACTATGAGCATTGTAGACCAACTCTTA
TTGAAGGTCTACAATACACTATAACATCACATGTAATACCTTTTCTCAAC
CCGCAATTGTTTGATAAAAAAGAGATTTTTTGGATAATTTTCCCCCCCCC
CCCCACTTTTTTTTTAGTTTTTTTATGATTATTATTTTAATCTAATAAAA
AAAAAAAAAACCTGTGGCGGGGGGTGCTCCCCATTCCTCTTTTCCCTTCC
CTCTCACTCTCCATCCTAACTCTCTCCTGCCTTCCCTCTTCCCTCCTTCT
TCCCCTCCCTCCTATCCTTTTGCACTCCACCCCCCCTTTCCCTTTCTCTC
CCATCCCCCTTCTCCTCTTCCCCCTCAACCAATCTATATATCCCCCACTT
CCACAACCCCTTTCCTCTCTTCTTTTCCCCACCTCCGCTTTCTCTCTCCC
GCACTCACCTTCTTCTTTGTACCCCCTCCCCAATACACATATACACCCCA
GCAGCCCACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_o17.b1 MSMg01no125_o17.b1 CHROMAT_FILE:
MSMg01no125_o17.b1 PHD_FILE: MSMg01no125_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:06 2005
         (250 letters)



>mm_chr14_52624730_52625379
          Length = 650

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccattcgacctggcagagatgaatcttctgggagagttgggatgagaagagtag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggaattccattcgacctggcagagatgaatcttctgggagagttgggatgagaagagtag 391

                                                                       
Query: 64  tgggtgtccgcagagcagtgtcccgggggtgtgcagtagcacagcaaggggacatttccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgggtgtccgcagagcagtgtcccgggggtgtgcagtagcacagcaaggggacatttccc 331

                                                                       
Query: 124 tgccctcggagcataaaggcaattgaacagggccactccggttcctgcagcaaaaggcac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgccctcggagcataaaggcaattgaacagggccactccggttcctgcagcaaaaggcac 271

                                                                       
Query: 184 caagcaggggagagctagacagtggtggcaggggaagctctggtccccgcccacctctct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caagcaggggagagctagacagtggtggcaggggaagctctggtccccgcccacctctct 211

                  
Query: 244 gtccagg 250
           |||||||
Sbjct: 210 gtccagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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