BAC Information

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BAC

Clone NameMSMg01-126D05
Chromosome14 (Build37)
Map Location 89,580,606 - 89,580,908
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126D05.T7 (MSMg01no126_d05.b1)MSMg01-126D05.TJ (MSMg01no126_d05.g1)
ACCAG335083AG335084
length722711
length of high quality
(start - end)
307 (42 - 348)293 (70 - 362)
definitionCHROMAT_FILE: MSMg01no126_d05.b1 PHD_FILE: MSMg01no126_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:29 2005CHROMAT_FILE: MSMg01no126_d05.g1 PHD_FILE: MSMg01no126_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTTCTTTGCCCAGGTCTTATTCTTTTCTTCCTCCCTTAAGCTTTTGTG
ACATCATTCTACATTTAGCTTTGTTCTTACTGCAAAATCAAATGATTTCA
TTGTTAACAATGTTTCACTCACGTTTATTTTTCCTAAATACTTTATGAAT
AACCTGGATGTTAGAATATAGTTTGAGAAAAAAGAAGTCCATAATTTAGT
AATTGCTGTATATGATGTTTATTTTTAACATTTCTGCTTGAGTGAATTTT
TTGAGTGTGAAAGAAAGAGTAATATTATACATGCAAAAAATTGTCTGGTA
TGTGTGTGTTTAGGTGCGTGTGTTAGTGTATAATTACAAAATACACATTG
ATGTCTATTAATTCACTTTCCATTAATCCTGAGTATAGCATTTCTACAAT
TGAAAGTGATAAGACTTTTATGCTGTTAACATTGGGATTTGCCATTACTT
ATACTCTTACATTAATATCCCATATAATTGTATTCTTTCCCTCTCTTTCG
CATACAACATTCCATTAATATGCCCTTTCATCGGCTTGCTTATTTTCTTT
GCCTGGTTAAACAATTGGTTTATTTTCGTAAATGACCCCGAAATCCTTTT
TCTTGTGAATAGTGCCCTTTTTTTCATTTTCCACTTTATACTTCATCTTT
ATTGTAATCATCCATTTCCTAA
TACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTCAGCTGTTTTCTTGGTTTTTATTTTTA
TTAATTAATTTATTTTTTTATATTCCATATTTTATTTCCCCTGATCCACC
TGCCAAAGCTCCTTTCCCCTACCTGTCACCACATGTATGTCCCTACCCCC
AACTCCACCTGACCTCTAAACTCCCTGGGGACTGCAGTTTCTTAAGGGTT
AGGTGCCTCATCTATGAATGAACACTGGCCCAGCAGTCGTCTACTGTATG
TGTGTTGGGGGCCTCCTATCAGCAAGTGTATGCTGCCTGTTTGGTGGTCC
AATGTCTGAGATATCTCACGGGTCCAGATTAATTGAGACTGCTGTTCCTC
CTACAGGATCACCCTTCTCTTCAGGTTCTTCCAGTCTTCCCTAATTCCAC
ACCAGGATTCTGCTGCTTCAGTCCATCGGCTGTGTGCAACTATCTTGCCC
CTATCCCCTGAGGTTGCCTATCTTCCATTGTTTCCGTTTCCCCCCTGGTT
TCCGTCCTTTTTCCCCACCCAATAACATACTAGGTTCCCCTCCCCTCTTT
CCTTTCCTGTCCCAATTCCCTTCCCAGGTCCCTTTCCTCCTTCCCTTTTG
ACATGGTCCCCCCTTCTTTTCCCTAAGCCGCAATTGAACATGTCCTTAAT
TTGCCCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_d05.b1 MSMg01no126_d05.b1 CHROMAT_FILE:
MSMg01no126_d05.b1 PHD_FILE: MSMg01no126_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:29 2005
         (307 letters)



>mm_chr14_89580402_89581108
          Length = 707

 Score =  563 bits (291), Expect = e-165
 Identities = 300/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttctttgcccaggtcttattcttttcttcctcccttaagcttttgtgacatc 64
           |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttctttgtgcaggtcttattcttttcttcctcccttaagcttttgtgacatc 264

                                                                       
Query: 65  attctacatttagctttgttcttactgcaaaatcaaatgatttcattgttaacaatgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attctacatttagctttgttcttactgcaaaatcaaatgatttcattgttaacaatgttt 324

                                                                       
Query: 125 cactcacgtttatttttcctaaatactttatgaataacctggatgttagaatatagtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactcacgtttatttttcctaaatactttatgaataacctggatgttagaatatagtttg 384

                                                                       
Query: 185 agaaaaaagaagtccataatttagtaattgctgtatatgatgtttatttttaacatttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaaaaagaagtccataatttagtaattgctgtatatgatgtttatttttaacatttct 444

                                                                       
Query: 245 gcttgagtgaattttttgagtgtgaaagaaagagtaatattatacatgcaaaaaattgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttgagtgaattttttgagtgtgaaagaaagagtaatattatacatgcaaaaaattgtc 504

              
Query: 305 tgg 307
           |||
Sbjct: 505 tgg 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)