BAC Information

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BAC

Clone NameMSMg01-126J03
Chromosome14 (Build37)
Map Location 117,970,620 - 118,122,385
singlet/doubletdoublet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126J03.T7 (MSMg01no126_j03.b1)MSMg01-126J03.TJ (MSMg01no126_j03.g1)
ACCAG335350AG335351
length698695
length of high quality
(start - end)
346 (71 - 416)339 (75 - 413)
definitionCHROMAT_FILE: MSMg01no126_j03.b1 PHD_FILE: MSMg01no126_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:00 2005CHROMAT_FILE: MSMg01no126_j03.g1 PHD_FILE: MSMg01no126_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,122,040 - 118,122,385)(117,970,620 - 117,970,958)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAGAGGTGCCCTAACAATTGCAGCATTAAAAAATAACACAGAAA
ACCTCTTTAAAGGTTTTCTGCATTCCAGAAAATATATACTTATCACAGAT
CATAAATGCAGCCTCGGATAATTTTAAACATATGGTGAGTTTCTTCTTAA
GTACTTATATTTTCGGATCCCTAATTATGCTCTAAATCTTTTTCTCGTCA
CAGAATAATTTCGCCTTGAGAATTTGTGTAGGTAAGACCGCCACTTCTTC
CCTCATAATATTTATGGGTGTTGGATCGGCTTACAATTTGCAATTCATTA
ATTCAGAATATAATTCCCCATAACTAAGAAGTCTCTTGTCTAGTTATTCA
GCTTAGTAGTGCTTCACCACAGTAAACTATGAGCTGCAAAAACAAACAAA
TTATTTCTCAAGCACTTAGCAGTCAGTATGTTATGGAAACAGCCTGGGAA
GGTGTTATCCTTACTCATTGCTATGGAGTGACTTCAGTCTTCACTGCTCA
GTTGTAGTTTTGTGCACTTGAAATGATCTATGCCCCCATTAGGTTCCTTA
TGCCAGTCGAGTATCTTTACGGTCCATTACCATGATAAAAGTAAATCAAT
TAAGGTGTATTGCCCTTTCTGAAGTTCCTTAATGTCTTGTTTTCTGTG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGACATCAGCTTGCCTCTGCTGGGAT
TAGATAATTTAGCATAGAGAGATTACCCTAAGTCACTGGGTAAAGTTTGC
ACCGGTGTGATCACAAGAGTCCTTAAAAGCAGAAGAGGAGATTTCACTTG
CTATTGACCCAGAAGGTGGAAAAAGATGCAGTGAGCCAAGCACAGGATGC
AGGAGTTACAAATCAAGGATAGGATGCAGGAGTTAGTTAGAAAGCAATGC
TCTGACTATGTGTTTCAATGTTTCACTTTAGTTAACTTAAGTACAAATAT
CTGTGGGCAACTCCTACCTATCATGTTAGACATCCTGGTGGACTCTTACA
GTCCTAGTGGTCATTGCCATGAACAATGAGGGAGATTGTCATTGTTCCTT
TTCATTTCGCAAATAGTCCATTAATAACGATACCCTCGTGCTACATGGAC
CGGAGTGCGCAATTCAGACTGTTTAATACACTGTTGCCACTAGTCTTCAC
CGGAGTTTATTACAGAAACGGGTGGCCCAGGTGGAAACTTCCATAGGCCC
CTGGGGGTTGTTTGTTGGTGAATTCTTGACCTCCCCTTGCATTAAACCTC
TGATGCCCCCTCCGCGCTTTCGACCTAATCGTCTCCCCCATTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_j03.b1 MSMg01no126_j03.b1 CHROMAT_FILE:
MSMg01no126_j03.b1 PHD_FILE: MSMg01no126_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:00 2005
         (346 letters)



>mm_chr14_118121840_118122585
          Length = 746

 Score =  669 bits (346), Expect = 0.0
 Identities = 346/346 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattgcagcattaaaaaataacacagaaaacctctttaaaggttttctgcattccagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caattgcagcattaaaaaataacacagaaaacctctttaaaggttttctgcattccagaa 487

                                                                       
Query: 61  aatatatacttatcacagatcataaatgcagcctcggataattttaaacatatggtgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aatatatacttatcacagatcataaatgcagcctcggataattttaaacatatggtgagt 427

                                                                       
Query: 121 ttcttcttaagtacttatattttcggatccctaattatgctctaaatctttttctcgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcttcttaagtacttatattttcggatccctaattatgctctaaatctttttctcgtca 367

                                                                       
Query: 181 cagaataatttcgccttgagaatttgtgtaggtaagaccgccacttcttccctcataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cagaataatttcgccttgagaatttgtgtaggtaagaccgccacttcttccctcataata 307

                                                                       
Query: 241 tttatgggtgttggatcggcttacaatttgcaattcattaattcagaatataattcccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttatgggtgttggatcggcttacaatttgcaattcattaattcagaatataattcccca 247

                                                         
Query: 301 taactaagaagtctcttgtctagttattcagcttagtagtgcttca 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taactaagaagtctcttgtctagttattcagcttagtagtgcttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no126_j03.g1 MSMg01no126_j03.g1 CHROMAT_FILE:
MSMg01no126_j03.g1 PHD_FILE: MSMg01no126_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:01 2005
         (339 letters)



>mm_chr14_117970420_117971158
          Length = 739

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacatcagcttgcctctgctgggattagataatttagcatagagagattaccctaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacatcagcttgcctctgctgggattagataatttagcatagagagattaccctaagtc 260

                                                                       
Query: 61  actgggtaaagtttgcaccggtgtgatcacaagagtccttaaaagcagaagaggagattt 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 attgggtaaagtttgcaccggtgtgatcacaagagtccttaaaagcagaagaggagattc 320

                                                                       
Query: 121 cacttgctattgacccagaaggtggaaaaagatgcagtgagccaagcacaggatgcagga 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttgctattgacccagaagttggaaaaagatgcagtgagccaagcacaggatgcagga 380

                                                                       
Query: 181 gttacaaatcaaggataggatgcaggagttagttagaaagcaatgctctgactatgtgtt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gttacaaatcaaggataggatgcaggagttagttagaaagcaatactctgactatgtgtt 440

                                                                       
Query: 241 tcaatgtttcactttagttaacttaagtacaaatatctgtgggcaactcctacctatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatgtttcactttagttaacttaagtacaaatatctgtgggcaactcctacctatcat 500

                                                  
Query: 301 gttagacatcctggtggactcttacagtcctagtggtca 339
           |||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gttagacatcctggtggactcttacaatcctagtggtca 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)