BAC Information

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BAC

Clone NameMSMg01-126K21
Chromosome14 (Build37)
Map Location 56,344,542 - 56,344,770
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta
Downstream geneDhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126K21.T7 (MSMg01no126_k21.b1)MSMg01-126K21.TJ (MSMg01no126_k21.g1)
ACCAG335431AG335432
length709725
length of high quality
(start - end)		427 (43 - 469)231 (70 - 300)
definitionCHROMAT_FILE: MSMg01no126_k21.b1 PHD_FILE: MSMg01no126_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:09 2005CHROMAT_FILE: MSMg01no126_k21.g1 PHD_FILE: MSMg01no126_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCGGCGGAATT
CGTGTGTGTGTCCGCGCGTGCGTGCATGCACACCTGTGTATATTTTGTGT
TCCACATTCATGCAAGATCCTGAAGTCAGAAAAGAGCATCAGATTCCCAG
CAGCTAGAGTTACAGATGGTGGTGAGAAGCCTCTGAGAAAGCAAATCTGG
ATCCTCGGCAAAGGAACGGGTGGGTGCTCCTGACAACTGAGCCGCCTCTC
TGCCTGTGTTTTGGTTTTGTTTCCTTGAGACAGGGTCTCACTCTGTAGCT
CTGGCTGTCCTGGAACTAACTATGTATACAAGGCTGGCCTTGAACTCACA
GAGATCTATTTGCCTCCCTAACTGCTGGGATTAAAGAGTATGTCACCACA
CCCTGCTTGCTGTGTCCGCTTGTTTTATTTTTTTTGAGACAAGGGCTCAA
CTAGCCCAAGCTGAAATCGCTATCCAGCCCAGGCTGGCCCTGAACTCTGG
CAGTTTTCCTGCCTCATTCTCCCTCTCAGTGCTGGGGTTATATGCATGAG
TCACTATACTCAGCCTCTCAATCACTTTTGGCCATATTCATGTATGCTGT
AAATATTATGTAACTAATTGTGACAAATATTGTTTTTACCTTATCTAGAA
CTTAGCAGTTCTGGACAATTTCTCCCTCCTCTACTCTGAGCTCCCTACCG
CATGGTTTA

TGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATTGCTCAATTGCATTAGCCACATTTCAGC
CTGGGAGCCTGGGACTAAAGCAATAGTTTGAGACAATGCATAGAATGAAT
GGGGTTTTTTTGGTTTGTTTTTTTTTTTCAGTGTCAAGAAAGTCAGAGGG
CTAAGGGCATGGTTTATTGGCTCCGTTTGCTTAATACCAACAAGGCCCTA
TAGTCTCCAGTACTGAAAAGAAAAGGAGAGGTGTTGGTTGCAGGCTGGAA
AGGTGGCTCTGCGAGTAAAGTGTTTGCTATATGACTGTGAAAACCTAAGT
TCAGATCTCCAGTATCCAACAGCCACGTAAAAGCCTGGATTCATACGTAA
CCTCTGCAGTGGTCCCCCCGTACTACCACAGTATCCTACGAATCCGGCTG
AGCTGTGGCACTCCACAGTCAGTGACTGACCCTATACCTTTTGTTTGATT
GATTGCCTGCCTCCATTCTCATTCACTCACTCCCCTCCCCTTTTCCCTCC
CTTCCTACCTTTCCCCACCCCCCCCCATTCTTTCTTTTTCCCCAATTATC
CCATCTTTTCTCCCCTTTTTTCTCCTCCCTTTCCTTTCCTCCTTTTATCC
CCCCTCCCTCCTTCCCTCTTCCTTTCCCCCCTTCCTTCCTTTCCCCTCCC
ACCCCCTATTTTTTTCCTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_k21.g1 MSMg01no126_k21.g1 CHROMAT_FILE:
MSMg01no126_k21.g1 PHD_FILE: MSMg01no126_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:09 2005
         (231 letters)



>mm_chr14_56344339_56344972
          Length = 634

 Score =  404 bits (209), Expect = e-117
 Identities = 223/229 (97%), Gaps = 3/229 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   tgctcaattgcattagccacatttcagcctgggagcctgggactaaagcaatagtttgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgctcaattgcattagccacatttcagcctgggagcctgggactaaagcaatagtttgag 373

                                                                       
Query: 64  acaatgcatagaatgaatggggtttttttggtttg---tttttttttttcagtgtcaaga 120
           ||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||
Sbjct: 372 acaatgcatagaatgaatggggttttttttgtttgttttttttttttttcagtgtcaaga 313

                                                                       
Query: 121 aagtcagagggctaagggcatggtttattggctccgtttgcttaataccaacaaggccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aagtcagagggctaagggcatggtttattggctccgtttgcttaataccaacaaggccct 253

                                                            
Query: 181 atagtctccagtactgaaaagaaaaggagaggtgttggttgcaggctgg 229
           ||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 252 atagtctccagtactgaaaagaaaaggagaggtgggggttgcaggctgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 634
Length adjustment: 9
Effective length of query: 222
Effective length of database: 625
Effective search space:   138750
Effective search space used:   138750
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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