BAC Information

Click to search

BAC

Clone NameMSMg01-129D21
Chromosome14 (Build37)
Map Location 85,888,901 - 86,047,630
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh17, LOC629794, LOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129D21.T7 (MSMg01no129_d21.b1)MSMg01-129D21.TJ (MSMg01no129_d21.g1)
ACCAG337301AG337302
length703695
length of high quality
(start - end)
274 (44 - 317)499 (75 - 573)
definitionCHROMAT_FILE: MSMg01no129_d21.b1 PHD_FILE: MSMg01no129_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:35 2005CHROMAT_FILE: MSMg01no129_d21.g1 PHD_FILE: MSMg01no129_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,888,901 - 85,889,170)(86,047,132 - 86,047,630)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTACATTATGCTTAATTTTCAAATAGTATAAGTTAAATGCTTAATT
TAACATCTTGGAAATTCTGACGCTAAATGTTTGAAAGAAGCTGACTTATA
ACCAAGACGGGATGTGACGTGTGGCCTTCTGATTGAGCACGTCATGGTAT
CTGTGACAGACAAATGTGTGCTTCATTGTAAGATATTACTAACCTGGAGT
ATCTTGTTTGTCTTAACAATTTAGATTGAATTTTACATTTTTCCTTCCAC
CGTAAAATGAGAAGGCAATTGAAAAATGTGCTCTGTTTTACCATCATAGT
GGTTTCCTTTTTTTACCTCCCCCCCCCCACCAGAGACATTATAGAAGCTA
AAAGGAGGAAGAATACCCCCAGCAATAGAAAAAAGGAGAGTTCAAAAAAA
ATGATGAGTTATAGAAAGGAAGGTTAAATAAAGAACCTGCATTATAGTTT
TTGTAAAAGTAGTAAAAATAGTTAGTCTGAAAATTCCAGGTATTTTGATA
AAGTATTACTTTTAGTTTTAATACAATAAAACTCTCTCTCTCTCTTTCTC
TCTCTCTCTCGTCTCTCATGTGTGTCCGTCCCCGCCTTCTTCCTTTTCCT
TCTATTCCCCCTCTTTTTTTTTCCCTTTTTTTTTTCCCTTTTTTCTCCCC
CCT
TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACTCAGTCCTTTTATTCCATGCCAG
GAGGATTGCGGAAGGGCCTAGCCCAATAGCTGTTTTTAGTGTTCTGTTTC
TCTCATAAAAATGTTTCTCAAAATTAGAAATTATGCTTTTCACCAAGCAA
GGCACACATACACACACACACCTTGCATGAACTCAGTACATACTAGATAC
ATGAATGAAAAATTAAAGTGTTTGTATTTGAGTGACTGAATTACTTATAT
AAAGGATGCTATTTCAAACACAGTATTGATGGAAGATGGGAAAAATGCAG
AGGTGAGGTTCCTTTGTGCTAGATATATTATGATTATTTAAAAAAATGTT
TTGACCAAGAAGATTTACATACATAAATTTAAGGATGAAATGAGTTTACA
GATGACAAATTAAATGACTTGGTATTTCTTAGTTAGCTATATGTGTACAC
ACATGAATGTTTCCACATGTGCATTACTAATTAGGTAATAGAAATATACA
GATCATATGGACAGCCATCATTGAGTTTGTATACATCCACTTTTTATGAG
AGTCAAATTAGCAAAGTCTCAAACATTATCATGGCTTTAACTACAGCATA
AAATCATTTGATTACTCATAAAATGTTTGGACATCTCTGTTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_d21.b1 MSMg01no129_d21.b1 CHROMAT_FILE:
MSMg01no129_d21.b1 PHD_FILE: MSMg01no129_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:35 2005
         (274 letters)



>mm_chr14_85888697_85889370
          Length = 674

 Score =  507 bits (262), Expect = e-148
 Identities = 268/270 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttacattatgcttaattttcaaatagtataagttaaatgcttaatttaacatc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttacattctgcttaattttcaaatagtataagttaaatgcttaatttaacatc 264

                                                                       
Query: 65  ttggaaattctgacgctaaatgtttgaaagaagctgacttataaccaagacgggatgtga 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggaaattctgaggctaaatgtttgaaagaagctgacttataaccaagacgggatgtga 324

                                                                       
Query: 125 cgtgtggccttctgattgagcacgtcatggtatctgtgacagacaaatgtgtgcttcatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtgtggccttctgattgagcacgtcatggtatctgtgacagacaaatgtgtgcttcatt 384

                                                                       
Query: 185 gtaagatattactaacctggagtatcttgtttgtcttaacaatttagattgaattttaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaagatattactaacctggagtatcttgtttgtcttaacaatttagattgaattttaca 444

                                         
Query: 245 tttttccttccaccgtaaaatgagaaggca 274
           ||||||||||||||||||||||||||||||
Sbjct: 445 tttttccttccaccgtaaaatgagaaggca 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no129_d21.g1 MSMg01no129_d21.g1 CHROMAT_FILE:
MSMg01no129_d21.g1 PHD_FILE: MSMg01no129_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:35 2005
         (499 letters)



>mm_chr14_86046932_86047830
          Length = 899

 Score =  826 bits (427), Expect = 0.0
 Identities = 482/501 (96%), Gaps = 4/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactcagtccttttattccatgccaggaggattgcggaagggcctagcccaatagctgtt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||
Sbjct: 699 cactcagtccttttattccatgccaggaggattgtggaagggcctagctgaatagctgtt 640

                                                                       
Query: 61  tttagtgttctgtttctctcataaaaatgtttctcaaaattagaaattatgcttttcacc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 639 tttagtgttctgtttctctcat-aaaatgtttctcaaaattagaaattatgcttttcacc 581

                                                                       
Query: 121 aagcaagg--cacacatacacacacacaccttgcatgaactcagtacatactagatacat 178
           ||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aagcaaggcacacacacacacacacacaccttgcatgaactcagtacatactagatacat 521

                                                                       
Query: 179 gaatgaaaaattaaagtgtttgtatttgagtgactgaattacttatataaaggatgctat 238
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 520 gaatgaaaaattaaagtgtttctatttgagtggctgaattacttatataaaggatgctat 461

                                                                       
Query: 239 ttcaaacacagtattgatggaagatgggaaaaatgcagaggtgaggttcctttgtgctag 298
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 460 ttcaaacacagtattgatggaagatgggaaagatgcagagatgaggttcctttgtgctag 401

                                                                       
Query: 299 atatattatgattatttaaaaaaatgttttgaccaagaagatttacatacataaatttaa 358
           | ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||
Sbjct: 400 acatattatgattatttaaaaaa-tgttttgaacaagaagatttatatacataaatttaa 342

                                                                       
Query: 359 ggatgaaatgagtttacagatgacaaattaaatgacttggtatttcttagttagctatat 418
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaatgaaatgagtttacagatgacaaattaaatgacttggtatttcttagttagctatat 282

                                                                       
Query: 419 gtgtacacacatgaatgtttccacatgtgcattactaattaggtaatagaaatatacaga 478
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 281 gtgtacacacatgaatgtttccacatgtgcattactaactaggtaagagaaatatacaga 222

                                
Query: 479 tcatatggacagccatcattg 499
           |||||||||||||||||||||
Sbjct: 221 tcatatggacagccatcattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)