BAC Information

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BAC

Clone NameMSMg01-129M16
Chromosome14 (Build37)
Map Location 72,793,418 - 72,793,655
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043136, LOC668477
Downstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129M16.T7 (MSMg01no129_m16.b1)MSMg01-129M16.TJ (MSMg01no129_m16.g1)
ACCAG337709AG337710
length731712
length of high quality
(start - end)
213 (46 - 258)238 (133 - 370)
definitionCHROMAT_FILE: MSMg01no129_m16.b1 PHD_FILE: MSMg01no129_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:20 2005CHROMAT_FILE: MSMg01no129_m16.g1 PHD_FILE: MSMg01no129_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATC
CAGGTCTACCTTTTCAGGTGTGTTAGAGTGTCCTGGACTGGGCGAAGTGT
GTGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGTTTCTGTTAGTACGA
TTCTTACATTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTAT
AGTTGCCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCAAC
CTGCAGGCGTGGGAGACTATTTCTTTCTTCTGAGTTTCAGTGGTCATAGT
AGTCTCTGTTTTTTTTTTCTCCCCCTCCCCCCGAAGGTGCACAGTTATCT
GGTGTTTGGACCTCCCCCTGGCTTAATATAATACTTTCTTCCCGGTGGTT
TTTCTTTAATCTGTGTTGCTTTGTTTTTCACCGTGGCCGGTTTGTTGTGT
CCGAACATGTCGTCGCCTCTTAATCTCTGCGCCTTTTCTCTTCCATTTGT
TTGCCCCTCTGTAGTCTCATTATGTCCTCCTCTTCCCACTCTCTCGTTTC
TCTTCCCCTTATTCCTATATTGTCCGCTCCTTTTTATCCCCCCCCTTCTT
CCCGTCGCCTTCTTCCCCTTTTGCCTGTTTTCCCCCTCTTTCTTCATCGC
TCTTCCCCCCCCCTTTTCCTCCTCCCCCTTG
ATGAACGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAAGGATGGACATCTGTGGCAACGATGC
CAAAGGCACAGACATGGCACCCGGTGCATGGCAGGTTGGTGGCGAGCTTT
TATTGTTTGTACTATTAAGGAAAATAAGGGAGGAATTTGGTTGAGACTAT
AAAAAATGCTGAATATGGGCGCACATTCACTTGTCACATCTAGGAACAAA
TTGTAATTAATTATGAACATAAATGTGAACAGGTTTTCAAATAAATATAA
AAGTCTTTTCATTCAATGATGAATGGAAGGCTACATGTCCCTATAGTGAA
GTTTGTCCCATTTCTATGATACTTGACTTGCTGAGTCATTGTCTAAGCAG
GTCCTGTTGTCTTCGAGGGCATTCAGAGCTGTGTCCCATCAGGCTCCCAT
CTGCCCGTTCTGTCCATCCTGTGCTGTCCAGCTGCAGTGCTATAGCCCTG
TGCACCTGCTTCACAGGCCTTTAAGAAAAGACTGTGGCTGTGTGTTTGCC
ACTCAATGCCACCTCCAATGCCATTTATTAATCGAGATGCTTGTCTGTCA
TTCTTTGACAGCTACTCAGACCTTATGTGTCCCAGTGTGTCAGTTACTGC
TCCTACCTTGCGACATATGCCCTGAGCAAAATGACTCCTGGACACGATCC
TTATATGCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_m16.g1 MSMg01no129_m16.g1 CHROMAT_FILE:
MSMg01no129_m16.g1 PHD_FILE: MSMg01no129_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:20 2005
         (238 letters)



>mm_chr14_72793218_72793855
          Length = 638

 Score =  422 bits (218), Expect = e-122
 Identities = 233/238 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttggtggcgagcttttattgtttgtactattaaggaaaataagggaggaatttggtt 60
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 438 aggttggtggtgagcttttattgtttgtgctattaaggaaaataagggaggaatttggtt 379

                                                                       
Query: 61  gagactataaaaaatgctgaatatgggcgcacattcacttgtcacatctaggaacaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 378 gagactataaaaaatgctgaatatgggcgcacattcacttgtcacatctaggaacaagtt 319

                                                                       
Query: 121 gtaattaattatgaacataaatgtgaacaggttttcaaataaatataaaagtcttttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtaattaattatgaacataaatgtgaacaggttttcaaataaatataaaagtcttttcat 259

                                                                     
Query: 181 tcaatgatgaatggaaggctacatgtccctatagtgaagtttgtcccatttctatgat 238
           || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 258 tccatgatgaatggaaggctacatgtccctacagtgaagtttgtcccatttctatgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)