BAC Information

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BAC

Clone NameMSMg01-130J10
Chromosome14 (Build37)
Map Location 106,672,364 - 106,672,621
singlet/doubletsinglet
Overlap genenone
Upstream geneNdfip2, LOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807
Downstream geneLOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130J10.T7 (MSMg01no130_j10.b1)MSMg01-130J10.TJ (MSMg01no130_j10.g1)
ACCAG338305
length715715
length of high quality
(start - end)
---623 (72 - 694)
definitionCHROMAT_FILE: MSMg01no130_j10.b1 PHD_FILE: MSMg01no130_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:27 2005CHROMAT_FILE: MSMg01no130_j10.g1 PHD_FILE: MSMg01no130_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXX
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATACATGAGCTGCTGTGGTCATTCTTTT
CAAATCACCGCACTGCCTTCAGTTCTATTAAAAGAGTTAGACCCCAGACT
ATTCTTGAGGGTGAAAGGATTCTTCATTTATTCTACAGAGGAAATGGTAG
TGCCTAAGTCAAAAGACGTACAAGGCTTTGCAACACATACCCATGAAGAT
CTGACGGGTGAACGGGTGTGGATTCTGATGGTGATACATCAAATACAATG
AAGCACATGGTCATAACTGCTTAACCTTAAGGATCTTTACCTATCCTAAA
TCAGATAGGTGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA
CTTCAGAAAATCAAACAACCCCATTAAAAAATGGGGCTCAGAACTGAACA
AAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAG
ATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGCCAAACGCTTTCTCATTGTGGTTCAG
GGCTAATAACAGGTGCAGGTCTTTTTTTTTTTTTTTTTTTTACAAAGCAA
ACTTGATTAATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_j10.g1 MSMg01no130_j10.g1 CHROMAT_FILE:
MSMg01no130_j10.g1 PHD_FILE: MSMg01no130_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:27 2005
         (623 letters)



>mm_chr14_106672165_106673187
          Length = 1023

 Score =  431 bits (223), Expect = e-125
 Identities = 250/259 (96%), Gaps = 2/259 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatacatgagctgctgtggtcattcttttcaaatcaccgcactgccttcagttctattaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 457 aatacatgagctgctgtggtcattcttttcaaaccaccgcactgccttcagttctattaa 398

                                                                       
Query: 61  aagagttagaccccagactattcttgagggtgaaaggattcttcatttattctacagagg 120
           |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aagagtgagacctcagactatgcttgagggtgaaaggattcttcatttattctacagagg 338

                                                                       
Query: 121 aaatggtagtgcctaagtcaaaagacgtacaaggctttgcaacacatacccatgaagatc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 337 aaatggtagtgcctaagtcaaaagacatacaaggctttgcaacacatacccatgaagatc 278

                                                                       
Query: 181 tgacgg-gtgaacgggtgtggattctgatggtgatacatcaaatacaatgaagcacatgg 239
           ||| || |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tga-ggagtgaacgggtatgaattctgatggtgatacatcaaatacaatgaagcacatgg 219

                              
Query: 240 tcataactgcttaacctta 258
           |||||||||||||||||||
Sbjct: 218 tcataactgcttaacctta 200



 Score =  116 bits (60), Expect = 5e-30
 Identities = 60/60 (100%)
 Strand = Plus / Minus

                                                                       
Query: 552 agccaaacgctttctcattgtggttcagggctaataacaggtgcaggtcttttttttttt 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agccaaacgctttctcattgtggttcagggctaataacaggtgcaggtcttttttttttt 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)