BAC Information

Click to search

BAC

Clone NameMSMg01-131B08
Chromosome14 (Build37)
Map Location 114,022,371 - 114,022,934
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131B08.T7 (MSMg01no131_b08.b1)MSMg01-131B08.TJ (MSMg01no131_b08.g1)
ACCAG338676AG338677
length747714
length of high quality
(start - end)
152 (74 - 225)636 (76 - 711)
definitionCHROMAT_FILE: MSMg01no131_b08.b1 PHD_FILE: MSMg01no131_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:11 2005CHROMAT_FILE: MSMg01no131_b08.g1 PHD_FILE: MSMg01no131_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATATTTGCGGCGCTAAACGACTCCTATTTTCAGAAATGCGCGGAA
TTCATTGTTTTATCTGCTAAGTAGTACTTCATTGTAGTAATGTACCATAT
TTTCTGTATCCATTCCTCCTTGCCGGACATCTGGGTTCTTTCTAGCTTCT
AGCTGTTATAAATAAGGCTGCTATGAATATAGTGGAACATGTGTCCTTAT
TACATGTTGGATCACCTTCTGGGTATATGCCCAGAAGCGTTATAGGAGAG
GTATTGCTTCATCTTCAGGTAGCACTATGTCCAATTTTCTGAGGAAACTC
TAGATTGATTTCCCGAGTGGTTGTTTCAGCTTGCACTCCCACCAATAATG
GAAGATTGTTCTTCTTCCTCCCCTTACTTGACACCACCTGATGACATTTG
AGATTTCAGCCATTCCTGATTGAAGTGAGGTGAAATATCACGGTTGCTTT
GATTTGCATTTTCCCTGATAACTAACGCTGTTGAACTTTCTCATTAAGTG
CTTCCTCATCTTTTCCATTATTCCTCCAATTGCAATTCTCTTTATTATGC
TCTTGAATCCCATTTTTTAATAAGTATTATATTTTATCTCTAGAGTTCTA
CATTTTTTGAGCTTTTTTTTTTATTTTGAATTTAACCCCTTTACTCTTAT
TATGTCTCGCTAATAAAACTTTCTCCATCCTGTTTCCCTGTATCTTCTCC
CTTACTACACCCGCCTCTATCTCCACAACATTTTTACTGAATAATTG
NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTAAAAGCAAATGTGGAAACTGTG
AATTTCTTGAGGCTAACTTTGATAAGAAAATGCAATCAAGTATCTCTGAA
TCCTGATGAAAAGCAGCTGAAGGTTCAGATTCGCTGAGCGATACGGTCAT
CATTTAGCAAGACAATGGTATCCATTGATGAGCACAGCCCAAACCATATT
TTAAAAAAGTTAAGTGCAAGTGTGAATATTGGCAATTAGTGTCAGCAATC
ACACAAAATCCATTGCAAGTGCTTGGATTACAGGCATGAATTACCACATG
ATTCCTGCCTATGAACGTAGATTGTATGACCTCCTTGCACAAAATTTAAA
GCCAGACAGTTGCCATAACTTTTGAATGTGTAAAAAATAATAGTGCTTAT
TTCTACTGGATCTATTTAAAAGAAAAGATACATTTGTCTTGCTATATTTT
CTGAGAACTCTTTGCCATATTTTAGCACTAGCTACCTAATGAATGTGTTA
TGAGCTTAGGTGTTTCAGCAAAAATCTGCATTAATCCCCATCAAACCAAA
GTTGGACTTGTAGCAGAAACCCTGAAGGACTCTGTGCTCTTAATTACTGC
TTTCTTCTTTCCAAATATAGAACTCCCCTGGTGATGAGCAACTGGAGAAA
AATCCATCACTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_b08.g1 MSMg01no131_b08.g1 CHROMAT_FILE:
MSMg01no131_b08.g1 PHD_FILE: MSMg01no131_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:11 2005
         (636 letters)



>mm_chr14_114021899_114022934
          Length = 1036

 Score = 1075 bits (556), Expect = 0.0
 Identities = 562/564 (99%)
 Strand = Plus / Minus

                                                                        
Query: 73   gaatcctgatgaaaagcagctgaaggttcagattcgctgagcgatacggtcatcatttag 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gaatcctgatgaaaagcagctgaaggttcagattcgctgagcgatacggtcatcatttag 977

                                                                        
Query: 133  caagacaatggtatccattgatgagcacagcccaaaccatattttaaaaaagttaagtgc 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  caagacaatggtatccattgatgagcacagcccaaaccatattttaaaaaagttaagtgc 917

                                                                        
Query: 193  aagtgtgaatattggcaattagtgtcagcaatcacacaaaatccattgcaagtgcttgga 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  aagtgtgaatattggcaattagtgtcagcaatcacacaaaatccattgcaagtgcttgga 857

                                                                        
Query: 253  ttacaggcatgaattaccacatgattcctgcctatgaacgtagattgtatgacctccttg 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  ttacaggcatgaattaccacatgattcctgcctatgaacgtagattgtatgacctccttg 797

                                                                        
Query: 313  cacaaaatttaaagccagacagttgccataacttttgaatgtgtaaaaaataatagtgct 372
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  caccaaatttaaagccagacagttgccataacttttgaatgtgtaaaaaataatagtgct 737

                                                                        
Query: 373  tatttctactggatctatttaaaagaaaagatacatttgtcttgctatattttctgagaa 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  tatttctactggatctatttaaaagaaaagatacatttgtcttgctatattttctgagaa 677

                                                                        
Query: 433  ctctttgccatattttagcactagctacctaatgaatgtgttatgagcttaggtgtttca 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  ctctttgccatattttagcactagctacctaatgaatgtgttatgagcttaggtgtttca 617

                                                                        
Query: 493  gcaaaaatctgcattaatccccatcaaaccaaagttggacttgtagcagaaaccctgaag 552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  gcaaaaatctgcattaatccccatcaaaccaaagttggacttgtagcagaaaccctgaag 557

                                                                        
Query: 553  gactctgtgctcttaattactgctttcttctttccaaatatagaactcccctggtgatga 612
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 556  gactctgtgctcttaattactgctttcttctttccagatatagaactcccctggtgatga 497

                                    
Query: 613  gcaactggagaaaaatccatcact 636
            ||||||||||||||||||||||||
Sbjct: 496  gcaactggagaaaaatccatcact 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)