BAC Information

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BAC

Clone NameMSMg01-132B15
Chromosome14 (Build37)
Map Location 48,046,066 - 48,046,349
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895
Downstream geneFbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132B15.T7 (MSMg01no132_b15.b1)MSMg01-132B15.TJ (MSMg01no132_b15.g1)
ACCAG339430AG339431
length711703
length of high quality
(start - end)
298 (69 - 366)283 (66 - 348)
definitionCHROMAT_FILE: MSMg01no132_b15.b1 PHD_FILE: MSMg01no132_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:31 2005CHROMAT_FILE: MSMg01no132_b15.g1 PHD_FILE: MSMg01no132_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCT
TAGCTTTGCGNCAAAAGAGATGGTTTAGCAGTTAAGAGTACTGTATTAGT
CAGAGTTCTCTAGAGTCACAGAACTTATGGGTAGTCTCTATATAATAAAG
GAAGTTATTGATGACTTATAGTCTGCAGCCCAATTCCCAACAATGGTTCA
GTAGTAGCTGTGAATGGAAGTTCAAGGATCTAGCAGTTACTCAGTCCCAC
GCAGCAAGCAGGCGAAGGAGCAAGAGCAAGACTCCCTTCTTCCAATGTCC
TTATGTTCTCTCCAGCATAAGGTGTAGCCCAGATTAAAGGTGTGTTCCAC
CACATCTTTAATCCCGATGACCTTGAACTCAGAGATTTAATCTTCTGGAA
TCCATAGCCACTATGCCTCAAGATCTCCATACCAAGATCCAGATCAGAAA
CTTCTATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAATTC
TGGATTGTAGTTCATTCCAAATATAGTCTGCTCGCTCTGGCCTAAAGATG
TATTTGCTATTATACATAAGCACACTGTAGCTGTCTTCAGACACACCAGA
AGAGGGCATCAGATCTCATTACAGAGGGTCTTGAGCCACCATGTGATTGC
TGGGAATTGAACTCAGAACCCCTGGAAGAGTAATTAACTCAGCTCTTAAC
TACTGAGCCAT
ATGTGGGAGGCCTGGCGGCGCCTGTTCCCAAATTTAGGTGACCTATAGAA
TTTTCGCAAAATTCAGGTCACTGGGCTTGGTAGCAGGCACCTTTGCCCAC
AGAGACATTTTCCTGCCCTAAAATTATTTCTTCTTTCTGTTCTCCCCTTC
CTCCCTCCCCACTCCCTTTCTTCTTTTCTTTGTCTTTTTCTTCCTTTCCT
TCCTTTTTCCCTCGCTCTCTCCCTCTCTTTTCCTTCCTTTCTTTTCTTTT
TTTTTCTTTTTCCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTGGATAAGG
TCTCTCTCTTTGACTCTGTAGCTCGGGCTGATCTGGAACTCATTGTGTTT
TTTTTTCTCCNTCCCCACCCCTTTGGCACCCTTCTTCCCTTGGCCTCCTG
ACTCCCGGGTAAACAAAAAAAACCTGTTTAATGTAGTCTGGCTTATAATG
AGGATTACCCACCTTAGTTACAGCACCATGAGTCTGAATAATATTTTATG
GTAGTAGTTCGTACTTATTTTAATTTGACTTAAATTTCCCTTTACTATTT
TTCCATTCAAGAAAATAACAAGCTTCAGGTTTTCTCACCTCACGGAGGTA
TAATATAAGGATGAAAGTCTGATTATCATATAAGATTTCATTTGTGGTAC
ACCTTGCTCAGAGGGAAGTTCAGGGTTTGAGGGTATTCCCATGGAAACAC
AGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_b15.g1 MSMg01no132_b15.g1 CHROMAT_FILE:
MSMg01no132_b15.g1 PHD_FILE: MSMg01no132_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:31 2005
         (283 letters)



>mm_chr14_48045866_48046549
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%), Gaps = 1/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtcactgggcttggtagcaggcacctttgcccacagagacattttcctgcccta-aaat 59
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 201 ggtcactgggcttggtagcaggcacctttgcccacagagacattttgctgccctacaaat 260

                                                                       
Query: 60  tatttcttctttctgttctccccttcctccctccccactccctttcttcttttctttgtc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttcttctttctgttctccccttcctccctccccactccctttcttcttttctttgtc 320

                                                                       
Query: 120 tttttcttcctttccttcctttttccctcgctctctccctctcttttccttcctttcttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttcttcctttccttcctttttccctcgctctctccctctcttttccttcctttcttt 380

                                                                       
Query: 180 tctttttttttctttttccttttcttttcttttcttttctttttttttggataaggtctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttttttttctttttccttttcttttcttttcttttctttttttttggataaggtctc 440

                                                       
Query: 240 tctctttgactctgtagctcgggctgatctggaactcattgtgt 283
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctttgactctgtagctcgggctgatctggaactcattgtgt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)