BAC Information

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BAC

Clone NameMSMg01-132G14
Chromosome14 (Build37)
Map Location 16,162,998 - 16,163,649
singlet/doubletsinglet
Overlap genenone
Upstream geneIl3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
Downstream geneLrrc3b, LOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132G14.T7 (MSMg01no132_g14.b1)MSMg01-132G14.TJ (MSMg01no132_g14.g1)
ACCAG339662AG339663
length719700
length of high quality
(start - end)
655 (42 - 696)516 (60 - 575)
definitionCHROMAT_FILE: MSMg01no132_g14.b1 PHD_FILE: MSMg01no132_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:55 2005CHROMAT_FILE: MSMg01no132_g14.g1 PHD_FILE: MSMg01no132_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAAAGCGCGGAATTC
CAGGTCTTTACTACCAAGGAAAGCCTTTTGTGGGTTGAAAATAAAATGTC
AATTCAAAAACAGTTGAAACTCCAGAGTACAAGAATTGACATAAAATCAG
ACAACAGCCACAGACAACCTAAAAATAATACATTGGCTAAGACTCTTGTT
GAAACTGACTCTCCTCTCCTGAGCTTGCCAAAAATGAACAAGTATGGCAG
ACTGATGTGGAAGTCCCAGTTGAAGAATACAGTAAGATTGTGAAATTATG
TATGACAGTGACCTCATTCGAAGGTGATCAATTACATAATCATAGATTTG
CGTGGACACAAGGGAGGAGAAAAATACCATTATTTCTTGCTTTGTGTTCT
TTTATTTATCTTCAATCCTTCTGTTCCTTTTTAATTAATCTATCTTTATC
CAAAAATAAATTTAAAACTGTTTAGAAATGTTTAAGCTACATGGAAAGGC
CATGTTTGGATATTCAGTGACTTACAGCAGAACTGACTAAGTGAGGTCAC
TTAGCTGATCTTGCCTGGCGACAGAAAAGGAAGAGATAGTGTACAGGGAT
AGGGTAAATGGTGCAAAGCAAGCAGAGTAAAACTAAACTGGAGCTCCTGT
GGGAAAGGAATTCTGTTTGGTGTTCCATCTGGTATCACTTTATTCCCATC
TACATCCTGTCATCAAGCT
GATGTGTGAGGCCTGGCGGCCGCTGTTCTAAAATGGAGGTGACCTATAGA
ATTTCCGCGGAATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATG
CTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTG
GGCGAAGTGGGCATTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCT
GTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGT
TAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGT
TACCCTCTATCATCTGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAG
TGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTA
CAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGGAGGTGAAGGCCCAAAA
CAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTT
GTCTGGAGTCGAAGATGTCGCCGCCTCAGAAGCTCTGTGGCTCTTGTCCG
GAAGGAGGCCGGCCGTCTGGAGCTGAGGTTGGCGCCGCCTCAGAAGCTCT
GTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGTGCC
GCCCCTGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAATGGCTGGCCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_g14.b1 MSMg01no132_g14.b1 CHROMAT_FILE:
MSMg01no132_g14.b1 PHD_FILE: MSMg01no132_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:55 2005
         (655 letters)



>mm_chr14_16162795_16163849
          Length = 1055

 Score = 1141 bits (590), Expect = 0.0
 Identities = 638/654 (97%), Gaps = 4/654 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccaggtctt-tactaccaaggaaagccttttgtgggttgaaaataaaatgtcaat 62
           ||||||||||||||  | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 855 gaattccaggtcttagaataccaaggaaagccttttgtgggttgaaagtaaaatgtcaat 796

                                                                       
Query: 63  tcaaaaacagttgaaactccagagtacaagaattgacataaaatcagacaacagccacag 122
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tcaaaaacagttaaaactccagagtacaagaattgacataaaatcagacaacagccacag 736

                                                                       
Query: 123 acaacctaaaaat-aatacattggctaagactcttgttgaaactgactctcctctcctga 181
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 acaacctaaaaataaatacattggctaagactcttgttgaaactgactctcctctcctga 676

                                                                       
Query: 182 gcttgccaaaaatgaacaagtatggcagactgatgtggaagtcccagttgaagaatacag 241
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 675 gcttgccaaaaatgaacaagtatggcagattgatgtggaagtcccagttgaagaatacag 616

                                                                       
Query: 242 taagattgtgaaattatgtatgacagtgacctcattcgaaggtgatcaattacataatca 301
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 615 taagattgtgaaattatgtatgacagtgacctcattctaaggtgatcaattacataatca 556

                                                                       
Query: 302 tagatttgcgtggacacaagggaggagaaaaataccattatttcttgctttgtgttcttt 361
            | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 555 catatttgcgtggacacaagggaggagaaaaataccgttatttcttgctttgtgttcttt 496

                                                                       
Query: 362 tatttatcttcaatccttctgttcctttttaattaatctatctttatccaaaaataaatt 421
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 495 tatttatcctcaatccttctgttcctttttaattaatctatctttatccaaaaa-aaatt 437

                                                                       
Query: 422 taaaactgtttagaaatgtttaagctacatggaaaggccatgtttggatattcagtgact 481
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 -aaaactgtttagaaatgtttaagctacatggaaaggccatgtttggatattcagtgact 378

                                                                       
Query: 482 tacagcagaactgactaagtgaggtcacttagctgatcttgcctggcgacagaaaaggaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tacagcagaactgactaagtgaggtcacttagctgatcttgcctggcgacagaaaaggaa 318

                                                                       
Query: 542 gagatagtgtacagggatagggtaaatggtgcaaagcaagcagagtaaaactaaactgga 601
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gagatagtgtacagggatagtgtaaatggtgcaaagcaagcagagtaaaactaaactgga 258

                                                                 
Query: 602 gctcctgtgggaaaggaattctgtttggtgttccatctggtatcactttattcc 655
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 257 gctcctgtgggaaaggaattctgtttggtgttccatctggtgtcactttattcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)