BAC Information

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BAC

Clone NameMSMg01-132H16
Chromosome14 (Build37)
Map Location 91,657,097 - 91,657,407
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043336, EG639558
Downstream geneEG665377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132H16.T7 (MSMg01no132_h16.b1)MSMg01-132H16.TJ (MSMg01no132_h16.g1)
ACCAG339712AG339713
length693691
length of high quality
(start - end)
316 (41 - 356)439 (72 - 510)
definitionCHROMAT_FILE: MSMg01no132_h16.b1 PHD_FILE: MSMg01no132_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:00 2005CHROMAT_FILE: MSMg01no132_h16.g1 PHD_FILE: MSMg01no132_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGCGGAAT
TCATGATTACTTATTTTTCTTTTGAAGAAGAAGGGAATAATTTGGGAAAA
ATTCATGGGATGACTGATAAAATTTAGCAATGATCATGTAGATTGACTAT
ATAAATCAAATAAAAATATGTTCAATATTCATATAGATGAATCACATGGA
CAATTAGCAATAGATTTTCTGGGGTTTGTTGATTTTCAGTGAAGAGTTGA
AGGAGTACTTGTTGGTTTTAGCCTGGAAAAGGGCTCAGAAATAAATGCTC
TGGATGGAGTGTAGGTTGTTATTAAGTCTTTTCTCAGCAGGGATACTTCC
TTGTCTCCGTGACTTNAANTCTTGNCCCCTCCAGTGTAATAGCTAGTCTT
GTGATTTATCCTGAACAAAACCCAGTGAAAAAATCTACTGGGGAGGGGCA
TTTTACAGTGCTGACAGAGATGTCTGATATCCACTGAACAGTGAAAGAAG
AAAATTTATAATCTCTGTAGACCAAAACACATAAACATTCTAAACTATTG
GGACATATGGAATAGATTGCCTACACATTCAAATGATTGGCAATATCTTG
GGACATTTTCAATCTCATATGCCCTTAAACTTCGTTTCACCACTCTTAAT
ATTGTCTTCAACATTGTCTCAAAATTTAACAAGTGACCCTCTG
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTATTTTTAAAAAGGACACAAGAATTT
TGTAGGTAAATGAATGGAACTAAAAAAAAAAAAAAAAAAAAAACATCATC
CTTGAGTGAGATAACCCAGACCCAAATGTACATTCATGGTATGTTTTCAC
TGCTAACTGGGATGCAAAGTACAAGATGTCCATGATACAATTCACAGACT
GAAGTTTTACAAAAAGGGGGGACCAAAGGAGGATGTATGAACTCACTTAG
TAGGGAGAGCAAAATAACCATGTGAGGCAAAGGGAGGGAAGGACCAGGGT
GGGAGAGGAATAGAGAGAGGTGGAGGGAAATAGAAAAACAGGAGAGAGGC
CCAGAGATCCAGGAAAATGAATAGAAATTTGCAGCTGCTGATTTGTACAA
CCAAAAATGGTCTGATTGGGGATGTGGGGGGGATCTCTAGGAAATCACTC
AGACTTGGGATAGTGGAGGCTCGCAAAGGTCAATGAGGTAGACCTTAGCC
AAGATGCATAACTGTGGGGTCAGGCAATCTGAAGAGGCCACATCCTATAA
CTAGGCAGGACCCCCAGTCAAGATATAAAGACAATAAGCCCACCACCCTC
AACACACATATACTCACTATTTTTCATTCCCTCCTTTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_h16.b1 MSMg01no132_h16.b1 CHROMAT_FILE:
MSMg01no132_h16.b1 PHD_FILE: MSMg01no132_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:00 2005
         (316 letters)



>mm_chr14_91656892_91657608
          Length = 717

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcatgattacttatttttcttttgaagaagaaggg-aataatttgggaaaaattc 64
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 206 ggaattcatgattacttatttttcttttgaagaagaggggtaataatttgggaaaaattc 265

                                                                       
Query: 65  atgggatgactgataaaatttagcaatgatcatgtagattgactatataaatcaaataaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atgggatgactgataaaatttagcaatgatcatgtagattgactatataaatcaaataaa 325

                                                                       
Query: 125 aatatgttcaatattcatatagatgaatcacatggacaattagcaatagattttctgggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatatgttcaatattcatatagatgaatcacatggacaattagcaatagattttctgggg 385

                                                                       
Query: 185 tttgttgattttcagtgaagagttgaaggagtacttgttggttttagcctggaaaagggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttgttgattttcagtgaagagttgaaggagtacttgttggttttagcctggaaaagggc 445

                                                                       
Query: 245 tcagaaataaatgctctggatggagtgtaggttgttattaagtcttttctcagcagggat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcagaaataaatgctctggatggagtgtaggttgttattaagtcttttctcagcagggat 505

                      
Query: 305 acttccttgtc 315
           |||||||||||
Sbjct: 506 acttccttgtc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)