Query= MSMg01no132_m01.b1 MSMg01no132_m01.b1 CHROMAT_FILE:
MSMg01no132_m01.b1 PHD_FILE: MSMg01no132_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:21 2005
(651 letters)
>mm_chr14_34896338_34897386
Length = 1049
Score = 1174 bits (607), Expect = 0.0
Identities = 638/649 (98%), Gaps = 2/649 (0%)
Strand = Plus / Minus
Query: 3 ggaattcactgtatcctctatttcctaccatttagctgaccctaggagggtcatgcaaac 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ggaattcactgtatcctgtatttcctaccatttagctgaccctaggagggtcatgcaaac 790
Query: 63 aagaaaatgaggctggcagaagtttacttaggatttgggggtgctcagcacccaggccct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 789 aagaaaatgaggctggcagaagtttacttaggatttgggggtgctcagcacccgggccct 730
Query: 123 aatccagcggagttctgtgggtcctcagatcctactatatgtgcccctccccccatctca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aatccagcggagttctgtgggtcctcagatcctactatatgtgcccctccccccatctca 670
Query: 183 aagttcagagcgatgctgtgggttgcatcctagacactgagctgagctcgtggtgtagcc 242
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 669 aagttcagagcgatgctgtgggttgcatcctagacactgagctgagctcatggtgtagcc 610
Query: 243 gtgtgcctccagcccgggtaaggagcacaaatatccctgagcatcagagaggagagcaca 302
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtgtgcctccagcccggggaaggagcacaaatatccctgagcatcagagaggagagcaca 550
Query: 303 gggttcagtttgaatggagagcagaaggtctgtttagcctgggacctgaggtgctaggct 362
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 549 gggttcagtttgaatggagagcagaaggtctgtttagcctgggacccgaggtgctaggct 490
Query: 363 gttcagagaaaaggatttttcaaccacatcacaaagtgccaccagagctaataaagtgga 422
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gttcagagaaaaggatttttctaccacatcacaaagtgccaccagagctaataaagtgga 430
Query: 423 agggccccaaggaggccttcacatggtgtttgtgaacggatgaagcctgtgtgtgatgat 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 429 agggccccaaggaggccttcacatggtgtttgtgaacggatgaaacctgtgtgtgatgat 370
Query: 483 gggtcaggacatgtgtgagtacagagatggagcgagtgcccctcgactcattgtaatccg 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 369 gggtcaggacatgtgtgagtacagagatggagcgagtgcccctcggctcattgtaatccg 310
Query: 543 cacagagacgttaagctgaggagggagaggcatgcacaaacttgtagtttgaaagggagt 602
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 309 cacaga--cgttaagctgaggagggagaggcacgcacaaacttgtagtttgaaagggagt 252
Query: 603 ggcctgttgcagttgaaaatgactgtggagtttgtaggaaacaggcagg 651
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggcctgttgcagttgaaaatgactgtggagtttgtaggaaacaggcagg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1049
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1039
Effective search space: 665999
Effective search space used: 665999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_m01.g1 MSMg01no132_m01.g1 CHROMAT_FILE:
MSMg01no132_m01.g1 PHD_FILE: MSMg01no132_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:21 2005
(620 letters)
>mm_chr14_34800229_34801245
Length = 1017
Score = 830 bits (429), Expect = 0.0
Identities = 464/479 (96%), Gaps = 8/479 (1%)
Strand = Plus / Plus
Query: 145 tccaaggacattctcaatggccaccctgttacctgtgtcttaccttctcctgtggaaacc 204
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tccaaggatgttctcaatggccaccctgttacctgtgtcttaccttctcctgtggaaacc 403
Query: 205 tgctgtaggatggatagaagggctcttggcgtaaacaaatatgtgaaatgtcttcgagcc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 404 tgctgtaggatggatagaagggctcttggcgtaaacaaatatgtgaaatgtcttccagct 463
Query: 265 gcatacagctgctctgggcacactttaggtgacatgctactaggcaaaggtgttctaaag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcatacagctgctctgggcacactttaggtgacatgctactaggcaaaggtgttctaaag 523
Query: 325 ccagaatgtgcccacaagatgtggccacaggtcagtctgatagagacaatccctccactt 384
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 524 ccagaatgtgcccacaagatgtggccacaggtcaatctgatagagacaatccctccactt 583
Query: 385 cggttttctctccccaagtgattctagtttgtattaagttgctcaaaaaaaaaaaaa-tc 443
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 584 cggttctctctccccaagtgattctagtttgtatcaagttgctcaaaaaaaaaaaaaatc 643
Query: 444 taaccagcagtttctctcgggcacttcaggaatgagtctaaaagcagagccatgttaaac 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 taaccagcagtttctctcgggcacttcaggaatgagtctaaaagcagagccatgttaaac 703
Query: 504 ctctgagtccccctcacc--ccccaagaggtgcattcagcactcgggtgcaggatctata 561
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ctctgagtccccc-----ggccccaagaggtgcattcagcactcgggtgcaggatctata 758
Query: 562 gcatagcagcctgccagcctctcctgtccacccatgtggctagcagctgggtagtcatg 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gcatagcagcctgccagcctctcctgtccacccatgtggctagcagctgggtagtcatg 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1017
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1007
Effective search space: 614270
Effective search space used: 614270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
