BAC Information

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BAC

Clone NameMSMg01-133A21
Chromosome14 (Build37)
Map Location 15,447,287 - 15,447,910
singlet/doubletsinglet
Overlap genenone
Upstream geneSynpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
Downstream geneLOC100042147, Slc4a7, Nek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133A21.T7 (MSMg01no133_a21.b1)MSMg01-133A21.TJ (MSMg01no133_a21.g1)
ACCAG340133AG340134
length690695
length of high quality
(start - end)
644 (42 - 685)622 (72 - 693)
definitionCHROMAT_FILE: MSMg01no133_a21.b1 PHD_FILE: MSMg01no133_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:45 2005CHROMAT_FILE: MSMg01no133_a21.g1 PHD_FILE: MSMg01no133_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATGCGCGGAATTCC
TGGTACTTCACGNAAAAAAGAGATGTTGAATTTTGTCAAATGCTTTTTCA
GTATCTAATGAAATGATCCTTTGGGGTTTTTTTCTTTGAGTTTGTTTCTG
TAGTGGATTACATTGATGGATTTCCATATATTGAACCATCCCTGAATCAC
TGGAATGAAGCCTACTTGATAGGGTGAAGGATTTTTTTGCTCCCAAACCC
ATCCACTCCTGCTTCCTGGCCTTGGCATTCCCCTGTACTGGGGCATATAA
TCTTCCCAAGACCAATGGTCTCTCCTCCCATTGATGGCCAACTAGGCCAT
CCTCTGCTACATATGCAACTAGAGACACAAGCTCTGAGGGGTACTGGTTA
GTTCATATTGTTGTTCCTCCTATAAGATTGCAAGCTTTAGCTCCTTGGCT
ACTTTCTCTACCTAATTCGTTGGGAGCCCTGTGTTCTACCCAATAGGTGA
CTGTGAGCATCCACTTCTGTGTTTGCCAGGCACTGCCATAGCCTCACAAG
TGACAACTATATCAGGGTCGTGTCAACAAAAACTTGCTGACATATGCAAT
AGTTTCTGGATTTGGTGTTTGTTTATGGGATAGATCCCTGGGTGGGGCAG
TCTGTGGATGGTCCTTTATTCCTTCTCAGCTCTAAACTTT
TGCAAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCCGAAAAACCAGAAGAGAGTTTCTTTGAATAAAAGGTAT
CTTAAAAAAAAAAAAGCAGACCCACACATGGTCTAAAAACTTTCCACACT
TTCCCTAAGGCCTCGTGAAGGACTAAACATGAATGAGTGAGCTTGCCAAG
CTACCTCAGAAAGTTTTTGCTTCCTTCCCCACATGACCAGTTTGTAGAAC
TCCAATGGTGACCTGCAATCCACAAGACTGTTCAGGCATACTCTAGTGGG
GCTGAGCCATGACCATGAATTATTTTTAGAAGTGTGACCAATACACACAA
CACATTATGCTGGGTTACAGGCAAAGGACAGGGGCAAACTGTTCCAAACA
TATGATTGGGCTTTCCCTGTCTGATAAGTGAAGGATAAGAAAACAGCAAT
GATTTCAGGCTTATAGAAAACAGCTGGCCTCCACTTAGGGCCTCCACATT
CCAGCATGGCTGCTAGCATTTACTATAGCATGCTGCAGCCTTGGAACACC
TAGGAATCATAGCAAGGGCTCATGGCCAGAGGTTACTTACTTTAGCAACT
TCACAACATTCTATTCATTCACTTCACCAATATTTATTCTGCCGAATTTG
CCCAACAGTATTTAGATGCTGAGGGCATGAATTCTTATTTTCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_a21.g1 MSMg01no133_a21.g1 CHROMAT_FILE:
MSMg01no133_a21.g1 PHD_FILE: MSMg01no133_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:45 2005
         (622 letters)



>mm_chr14_15447087_15448110
          Length = 1024

 Score = 1131 bits (585), Expect = 0.0
 Identities = 614/629 (97%), Gaps = 12/629 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagagagtttctttgaataaaaggtatctt-aaaaaaaaaaaagcagacccaca-cat 58
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 824 agaagagagtttctttgaataaaaggtatcttaaaaaaaaaaaaagcagacccacaccat 765

                                                                       
Query: 59  ggtctaaaaactttccacactttccctaaggcctcgtgaaggactaaacatgaatgagtg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggtctaaaaactttccacactttccctaaggcctcgtgaaggactaaacatgaatgagtg 705

                                                                       
Query: 119 agcttgccaagctacctcagaaagtttttgcttccttccccacatgaccagtttgtagaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agcttgccaagctacctcagaaagtttttgcttccttccccacatgaccagtttgtagaa 645

                                                                       
Query: 179 ctccaatggtgacctgcaatccacaagactgttcaggcatactctagtggggctgagcca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ctccaatggtgacctgcaatccacaagactgttcaggcatactctagtggggctgagcca 585

                                                                       
Query: 239 tgaccatgaatt-----atttttagaagtgtgaccaatacacacaacacattatgctggg 293
           ||||||||||||     |     |||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgaccatgaattagaaca-----agaagtgtgaccaatacacacaacacattatgctggg 530

                                                                       
Query: 294 ttacaggcaaaggacaggggcaaactgttccaaacatatgattgggctttccctgtctga 353
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttacagggaaaggacaggggcaaactgttccaaacatatgattgggctttccctgtctga 470

                                                                       
Query: 354 taagtgaaggataagaaaacagcaatgatttcaggcttatagaaaacagctggcctccac 413
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 469 taagtgaaggataagaaaacagcaatgatttcaggcttatagaaagcagctggcctccac 410

                                                                       
Query: 414 ttagggcctccacattccagcatggctgctagcatttactatagcatgctgcagccttgg 473
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 409 ttagggcctccacattccagcatggctgctagcatttactgtagcatgctgcagccttgg 350

                                                                       
Query: 474 aacacctaggaatcatagcaagggctcatggccagaggttacttactttagcaacttcac 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aacacctaggaatcatagcaagggctcatggccagaggttacttactttagcaacttcac 290

                                                                       
Query: 534 aacattctattcattcacttcaccaatatttattctgccgaatttgcccaacagtattta 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aacattctattcattcacttcaccaatatttattctgccgaatttgcccaacagtattta 230

                                        
Query: 594 gatgctgagggcatgaattcttattttcg 622
           |||||||||||||||||||||||||||||
Sbjct: 229 gatgctgagggcatgaattcttattttcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1024
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1014
Effective search space:   620568
Effective search space used:   620568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)