Query= MSMg01no133_e19.b1 MSMg01no133_e19.b1 CHROMAT_FILE:
MSMg01no133_e19.b1 PHD_FILE: MSMg01no133_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:05 2005
(655 letters)
>mm_chr14_50336697_50337750
Length = 1054
Score = 953 bits (493), Expect = 0.0
Identities = 526/553 (95%), Gaps = 26/553 (4%)
Strand = Plus / Minus
Query: 5 ggaattcagtgaattctctcgcttgagtttgagcagtgataaaagtcaccctcaactaat 64
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ggaattcagtgaattct-ttgcttgagtttgagcagtgataaaagtcaccctcaactaat 469
Query: 65 tctttcattaatcttttgtcatcctggccacatagctcctctgacttatcaatgatagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctttcattaatcttttgtcatcctggccacatagctcctctgacttatcaatgatagga 409
Query: 125 ctttcccttgaacgcattgctttgaaggcatggactgtatccatctctctatcctttttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctttcccttgaacgcattgctttgaaggcatggactgtatccatctctctatcctttttc 349
Query: 185 cagcaatttcctgaccaccaaagaagcttaattgatcattgaattaaatcatatctctgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cagcaatttcctgaccaccaaagaagcttaattgatcattgaattaaatcatatctctgc 289
Query: 245 agataactcctgagttcaaacatctgattcttttaggtctacctccttgcttccactggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agataactcctgagttcaaacatctgattcttttaggtctacctccttgcttccactggg 229
Query: 305 aaatctagaatatgaacccttttgtataatataatataatataatataatataatataat 364
|||||||||||||||||||||||| |||||||||||
Sbjct: 228 aaatctagaatatgaacccttttg-------------------------tataatataat 194
Query: 365 ataatataatataatataatataatataatataatataagtgtttatatattatattata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ataatataatataatataatataatataatataatataagtgtttatatattatattata 134
Query: 425 tatcatatattatatatttgcttaatataaagacagatatttttgtaaaacaatgtgaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tatcatatattatatatttgcttaatataaagacagatatttttgtaaaacaatgtgaaa 74
Query: 485 ttctatatctatgattatggcattgttcatagttcagaacctagtatttcttataacaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ttctatatctatgattatggcattgttcatagttcagaacctagtatttcttataacaat 14
Query: 545 gaagactgtcaat 557
|||||||||||||
Sbjct: 13 gaagactgtcaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space: 673380
Effective search space used: 673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_e19.g1 MSMg01no133_e19.g1 CHROMAT_FILE:
MSMg01no133_e19.g1 PHD_FILE: MSMg01no133_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:05 2005
(630 letters)
>mm_chr14_50258992_50260021
Length = 1030
Score = 1195 bits (618), Expect = 0.0
Identities = 627/630 (99%), Gaps = 2/630 (0%)
Strand = Plus / Plus
Query: 1 aattctttcacagtcttctactagaaaggaaagttggatatgggtcctgatgggctataa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aattctttcacagtcttctactagaaaggaaagttggatatgggtcctgatgggttataa 260
Query: 61 ttcctaccttctcatctgaagattccaggtaagaatctacccttgagttttctagctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctaccttctcatctgaagattccaggtaagaatctacccttgagttttctagctcct 320
Query: 121 aaaagcaccaccactccttggctagtggcttcttttccaatcttcagagctaacaatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagcaccaccactccttggctagtggcttcttttccaatcttcagagctaacaatggc 380
Query: 181 acactgtgtctttctaatgtagcatcactctgatttcctctttgaaggacactgatgacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactgtgtctttctaatgtagcatcactctgatttcctctttgaaggacactgatgacc 440
Query: 241 atctttagtctgcccagatgatcccaaataggatctcttaattcatctataaccttctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctttagtctgcccagatgatcccaaataggatctcttaattcatctataaccttctct 500
Query: 301 ctcctttataagataactgtggtggtttgaataagaatgcccccccacacacacacataa 360
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 501 ctcctttataagataactgtggtggtttgaataagaatgccccccc-c-cacacacataa 558
Query: 361 gctcaaatatatgaatgtttgcttcctagttagccatctgtttaggaaggattaggagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctcaaatatatgaatgtttgcttcctagttagccatctgtttaggaaggattaggagtt 618
Query: 421 gtgggcttgatgaggtacggccttgttggcagaggtatgtcactggcacgtaggcttgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtgggcttgatgaggtacggccttgttggcagaggtatgtcactggcacgtaggcttgag 678
Query: 481 atttgaaaagtcctagtcagaggcctagtttctctatgttcacctttcagataagatgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atttgaaaagtcctagtcagaggcctagtttctctatgttcacctttcagataagatgtg 738
Query: 541 aattttcagctattgctccagtgccatgcctgtagtcatgctctctctgtcatgatggtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aattttcagctattgctccagtgccatgcctgtagtcatgctctctctgtcatgatggtc 798
Query: 601 atggattcaccctctgaaactgtaatcaag 630
||||||||||||||||||||||||||||||
Sbjct: 799 atggattcaccctctgaaactgtaatcaag 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
