BAC Information

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BAC

Clone NameMSMg01-133G13
Chromosome14 (Build37)
Map Location 98,603,799 - 98,776,600
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668659, Dach1
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133G13.T7 (MSMg01no133_g13.b1)MSMg01-133G13.TJ (MSMg01no133_g13.g1)
ACCAG340397AG340398
length676682
length of high quality
(start - end)		147 (374 - 520)608 (71 - 678)
definitionCHROMAT_FILE: MSMg01no133_g13.b1 PHD_FILE: MSMg01no133_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:13 2005CHROMAT_FILE: MSMg01no133_g13.g1 PHD_FILE: MSMg01no133_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,776,454 - 98,776,600)(98,603,799 - 98,604,406)
sequence
AAAATTTGCGGCGCTAAACGACTCCTATTTTTTCACTTGCNCGGAANNCC
AGCTTTTTCGGCAGCCGGAGGAGNAGAGNCNCCNAACACNGCCNNNGGAC
AACAAGNAGAACCCCCCCCNCNNCCAGCAGCANGCCAGCCCCAAAANNAN
CAGGCNNCCACCANAANGANAANGAACNAAACNGCNGAAACCANAAGAAA
GNCCAAANNAAACGNNNGCNNNNANAAGAGNNGCCNNGGNCANAGNGTCT
TATCACAGCAAAGGAAACCCGAACNAAGACACNANCCANCANAGNCANNC
CAGNCANNCCCTTTTTTTTTTTTTCGCCCAANGNAGGNGAGCACAAGNNN
AATTCTTCTCTCCCCCCACCCGCCTTTTACCTGTGATCTTGAATCTGAGT
CAGGAACTTTCATCCTGCATTCCCACTTTGCCCTATTTGTGCAAAAGTAA
CTTTCCTTGAAGTCTTTTGGAGAACAACATTGATTTTTAGGTCACCCCCC
CATCCCCCATCCCCGGACGTATAGTCAGTTAAGCTCAGGGGAAAGCCTTC
TGTTGGAGTACCACTGGAAGGCACTTGGGCTTAAAAATTTTTGATTCATG
CCCTAGCAGTTGTGAATAACACAAATACTGGTTCTGCTTACAAAGCTCAC
TTTTTTTTTTTATTTAAAGCCACTGA

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCCCTAGCACAGTACGAAACTGATTATCA
AAAAAGGTTTTTATGTTTGTTTTTTGATAATTGTCAGTAATATAAGAACA
TAAAACATATTTCGGTGTACTTCAGGGCAAATGTTTCTATTCATTAAAAT
ACAGAAAACCAATAGCATTTAAGTCAAATATGTATTTTGACTTAATGATA
ATCAAATCCTTCATGAAAGTTTCTGATGGTGTGTTTAATAGCAATGAAGA
TATGGGAGATCATTTAAATCACACCCTATTTCTTTCACTTTATTGCTCTT
TTTATGAAATTTCAGAAATTTTTGATCAATACAAACTGTACCTAGAAGAA
CTCAGTTACATTGTATGATTTAGAATGTTTTAATAGAAGCTTCTTGCATG
CTTTCAAACAATTTCTGCCTTCACAATTTATTCATAATAGTAACTATTAA
TATTAACTAATTTTGAGCTTTGCAATACATTGATGCATGGGTCCACGTTA
TCTTCACTCTACAGATGAGAAGACATGAGCAACAGGACTTTAAGGATCTG
GTGCAGTCACTGCAGAGTTTCTATGAGTAGCAGAGGAAGGTCTAGGGCAG
TCTGGCTCTAGGGAAACTGCTCCTTAGCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_g13.b1 MSMg01no133_g13.b1 CHROMAT_FILE:
MSMg01no133_g13.b1 PHD_FILE: MSMg01no133_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:13 2005
         (147 letters)



>mm_chr14_98776254_98776800
          Length = 547

 Score =  284 bits (147), Expect = 1e-81
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttacctgtgatcttgaatctgagtcaggaactttcatcctgcattcccactttgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cttttacctgtgatcttgaatctgagtcaggaactttcatcctgcattcccactttgccc 288

                                                                       
Query: 61  tatttgtgcaaaagtaactttccttgaagtcttttggagaacaacattgatttttaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tatttgtgcaaaagtaactttccttgaagtcttttggagaacaacattgatttttaggtc 228

                                      
Query: 121 acccccccatcccccatccccggacgt 147
           |||||||||||||||||||||||||||
Sbjct: 227 acccccccatcccccatccccggacgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no133_g13.g1 MSMg01no133_g13.g1 CHROMAT_FILE:
MSMg01no133_g13.g1 PHD_FILE: MSMg01no133_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:13 2005
         (608 letters)



>mm_chr14_98603599_98604606
          Length = 1008

 Score = 1176 bits (608), Expect = 0.0
 Identities = 608/608 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccctagcacagtacgaaactgattatcaaaaaaggtttttatgtttgttttttgataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccctagcacagtacgaaactgattatcaaaaaaggtttttatgtttgttttttgataa 260

                                                                       
Query: 61  ttgtcagtaatataagaacataaaacatatttcggtgtacttcagggcaaatgtttctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcagtaatataagaacataaaacatatttcggtgtacttcagggcaaatgtttctat 320

                                                                       
Query: 121 tcattaaaatacagaaaaccaatagcatttaagtcaaatatgtattttgacttaatgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattaaaatacagaaaaccaatagcatttaagtcaaatatgtattttgacttaatgata 380

                                                                       
Query: 181 atcaaatccttcatgaaagtttctgatggtgtgtttaatagcaatgaagatatgggagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaaatccttcatgaaagtttctgatggtgtgtttaatagcaatgaagatatgggagat 440

                                                                       
Query: 241 catttaaatcacaccctatttctttcactttattgctctttttatgaaatttcagaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttaaatcacaccctatttctttcactttattgctctttttatgaaatttcagaaatt 500

                                                                       
Query: 301 tttgatcaatacaaactgtacctagaagaactcagttacattgtatgatttagaatgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgatcaatacaaactgtacctagaagaactcagttacattgtatgatttagaatgttt 560

                                                                       
Query: 361 taatagaagcttcttgcatgctttcaaacaatttctgccttcacaatttattcataatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatagaagcttcttgcatgctttcaaacaatttctgccttcacaatttattcataatag 620

                                                                       
Query: 421 taactattaatattaactaattttgagctttgcaatacattgatgcatgggtccacgtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taactattaatattaactaattttgagctttgcaatacattgatgcatgggtccacgtta 680

                                                                       
Query: 481 tcttcactctacagatgagaagacatgagcaacaggactttaaggatctggtgcagtcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttcactctacagatgagaagacatgagcaacaggactttaaggatctggtgcagtcac 740

                                                                       
Query: 541 tgcagagtttctatgagtagcagaggaaggtctagggcagtctggctctagggaaactgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcagagtttctatgagtagcagaggaaggtctagggcagtctggctctagggaaactgc 800

                   
Query: 601 tccttagc 608
           ||||||||
Sbjct: 801 tccttagc 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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