BAC Information

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BAC

Clone NameMSMg01-133G17
Chromosome14 (Build37)
Map Location 73,684,337 - 73,684,930
singlet/doubletsinglet
Overlap geneRb1
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, P2ry5
Downstream geneItm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133G17.T7 (MSMg01no133_g17.b1)MSMg01-133G17.TJ (MSMg01no133_g17.g1)
ACCAG340404AG340405
length696691
length of high quality
(start - end)
544 (67 - 610)587 (68 - 654)
definitionCHROMAT_FILE: MSMg01no133_g17.b1 PHD_FILE: MSMg01no133_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:13 2005CHROMAT_FILE: MSMg01no133_g17.g1 PHD_FILE: MSMg01no133_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGAATT
CAATAGGATCCCAAAGGCAAGCTTCAACAGATAATAAGAGATGGAAGAGG
GAAGCTCAGGCTTTGGGGACATGATAGAAGAAATAGATACATTAGTGAAA
GGACACGTTAAATCCAAAAAAAATAAAATCTGACACAAAGTATCCAGAAA
AGCTGGGACCTATGAAAAGACCAAACCAAAGGACAATAGGAATAGAGGAA
GGAGAGGAATCCCAGAAAAATATTTTCAACAACAAAAAAAAAAATCATGG
AAGAAAATTTCCTGACCTAAAGAAGGAGACACCTTTCAAGGTAAAGAGAA
GAATACAAAGTCACAAATAAATTGGCCCAGAGAAGGAAGCCCCCTTAGCA
CATAATAATTAAAACACGAAAACATTCAGAGCAAAGAAAGAATATTAACA
TCTGCCAGGGGAAATGACCAAGTACACATGACTTCTCAATGGAGACTCTA
AAAGCCAAAAGGGCCTCGATGAATGTGCTGCAGACTCTAAGAGATCACGG
CAGCCAGCCCAAACTACTATACCCAGCAAAACATTCAATCGACATATATG
GAGAAAATAAGATATTCCATGATAAAGTCAAACAAATACCTACAAATCCC
TCCTACAGAAGATGCTATAAAGAAAACTCCGATGAAAGGAAGTTAA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCAGAAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCT
GTCTGAAAGAACCCCCCCCTCCCCCCCGCAAAAAAAAAAGAATTGCAGTG
TGTTATAAACAGGTATTATACTACCTTGCAGAAGGTAAGGGTGAGACTAG
AGAATTCATCTGGAATGCCAGGAGCCTTTGCAGTTCTGAGTCTTTGTAGG
ACAAACTTTATCCTCCCCTCTTTTCCCAGGCAGCACTGGTTCCTTTTACC
TTCTGTAGCAATGACTTCTCCCTCCAAGTCAGAAGGTGGAAAGCTGAGCA
TTCTGCTGCTTCATTGCAGGCTGGTACTGCCTCTCCTGGCCCCTGGCTAA
TGTGCGCCTTCCTTTCAGAAGGTTGTTTACCAGGGGGGAGGCTGTTTCAC
CCGGTTTGCGCCTTTGCGCTTCATACTGGGAACACCTGATAGCAATCTCA
TCCCTGTTTCTTCACTAGCTTAGCTTTTAGGTAACATACAAATGAGTTTA
TAGTGACATTTTCATATCATTGATTTTTTTCTTTGCTGTCTACACTCCTG
TAATATTTCTTTACTGAATTCATTGCAAACATCCTTCTGTACCATATCAT
ATGGACTTAAAACACCTACCTGATGCTGGGTTATTAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_g17.g1 MSMg01no133_g17.g1 CHROMAT_FILE:
MSMg01no133_g17.g1 PHD_FILE: MSMg01no133_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:14 2005
         (587 letters)



>mm_chr14_73684092_73685081
          Length = 990

 Score =  998 bits (516), Expect = 0.0
 Identities = 573/596 (96%), Gaps = 11/596 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggacagccagggctacacagagaaaccctgtctgaaagaac------ccccccctc 54
           |||||||||||||||||||||||||||||||  ||||||||||||      ||||||| |
Sbjct: 839 tccaggacagccagggctacacagagaaacc--gtctgaaagaacccaccacccccccac 782

                                                                       
Query: 55  c-cccccgcaaaaaaaaaagaattgcagtgtgttataaacaggtattatactaccttgca 113
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cacccccgcaaaaaaaaaagaattgcagtgtgttataaacaggtattatactaccttgca 722

                                                                       
Query: 114 gaaggtaagggtgagactagagaattcatctggaatgccaggagcctttgcagttctgag 173
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 721 gaaggtaagggtgagactagagaatttatctggaatgccaggagcctttgcagttctgag 662

                                                                       
Query: 174 tctttgtaggacaaactttatcctcccctcttttcccaggcagcactggttccttttacc 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tctttgtaggacaaactttatcctcccctcttttcccaggcagcactggttccttttacc 602

                                                                       
Query: 234 ttctgtagcaatgacttctccctccaagtcagaaggtggaaagctgagcattctgctgct 293
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 601 ttctgtagcaatgacttctccctgcaagtcagaaggtggaaagctgagcattctgctgca 542

                                                                       
Query: 294 tcattgcaggctggtactgcctctcctggcccctggctaatgtgcgccttcctttcagaa 353
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcgttgcaggctggtactgcctctcctggcccctggctaatgtgcgccttcctttcagaa 482

                                                                       
Query: 354 ggttgtttaccaggggggaggctgtttcacccgg-tttgcgcctttgcgcttcatactgg 412
           |||||||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||||||
Sbjct: 481 ggttgtttaccaggggagaggctgtttctcccggctttgcgcctttgcgattcgtactgg 422

                                                                       
Query: 413 gaa-cacctgatagcaatctcatccctgtttcttcactagcttagcttttaggtaacata 471
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 421 gaaacacctgatagcaatctcatccctgtttcttcactagcttaccttttaggtaacata 362

                                                                       
Query: 472 caaatgagtttatagtgacattttcatatcattgatttttttctttgctgtctacactcc 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaatgagtttatagtgacattttcatatcattgatttttttctttgctgtctacactcc 302

                                                                   
Query: 532 tgtaatatttctttactgaattcattgcaaacatccttctgtaccatatcatatgg 587
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 301 tgtaatatttctttactgaattcattgcaaacattcttttgtaccatatcatatgg 246


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 990
Length adjustment: 10
Effective length of query: 577
Effective length of database: 980
Effective search space:   565460
Effective search space used:   565460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)