Query= MSMg01no133_j03.b1 MSMg01no133_j03.b1 CHROMAT_FILE:
MSMg01no133_j03.b1 PHD_FILE: MSMg01no133_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:24 2005
(541 letters)
>mm_chr14_100332402_100333342
Length = 941
Score = 992 bits (513), Expect = 0.0
Identities = 534/541 (98%)
Strand = Plus / Minus
Query: 1 ctggaatcctctgcccattctgctggaatgcacgggatattcgggggaagccgttgtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggaatcctctgcccattctgctggaatgcacgggatattcgggggaagccgttgtctc 682
Query: 61 taagtttccattcacctaaataagcgccctttatcagatgggagtctccagttagaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagtttccattcacctaaataagcgccctttatcagatgggagtctccagttagaagta 622
Query: 121 aaggcaactaagtgactcagactgccataaaccaaggatcatggggactctagaagcgga 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 aaggcaactaagtgactcagactgccataaaccaaggaacatggggactctagaagcgga 562
Query: 181 tagggtgtaaaagaagataaagcagaagcagaacccctgactcagagcagcaggccaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tagggtgtaaaagaagataaagcagaagcagaacccctgactcagagcaacaggccaggt 502
Query: 241 gcagcggaaggacttagcaggcagctctgacccagaggagcccagcccaacactgcccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 gcagcggaaggacttagcaggcagctctgacccagaggagcccagcccaacactggccct 442
Query: 301 cacactcagcgtaagggaagacaggtccttatgatggacttcagactgggctgtatctag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacactcagcgtaagggaagacaggtccttatgatggacttcagactgggctgtatctag 382
Query: 361 ccctgggctaaggaggaagggcctgtgtgttgacaggactaaggttatttcagaaggaga 420
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 381 ccctgggctaaggaggaagggcctgggtgttgacaggactaaggctatttcagaaggaga 322
Query: 421 ggaagaggggagaaacggagttgtggtttcctgaaagacaaggaggctttagtggcaaag 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagagggaagaaacggagttgtggtttcctgaaagacaaggaggctttagtggcaaag 262
Query: 481 ccgtggagagcactcgtcgcaggttggccaccttcagttttctcttctgttcaaaggggg 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgtggagagcactcgtcgcaggctggccaccttcagttttctcttctgttcaaaggggg 202
Query: 541 a 541
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_j03.g1 MSMg01no133_j03.g1 CHROMAT_FILE:
MSMg01no133_j03.g1 PHD_FILE: MSMg01no133_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:25 2005
(231 letters)
>mm_chr14_100193899_100194536
Length = 638
Score = 395 bits (204), Expect = e-114
Identities = 227/238 (95%), Gaps = 7/238 (2%)
Strand = Plus / Plus
Query: 1 ctataacttcagtttcaaaagacctcttcaggccttcacatgatatggtacacagacata 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ctataacttcagtttcaaaagacctcttcaggccttcacatgatgtggtacacagacata 260
Query: 61 catgtaggtaaaacacccatacattttgaaaaaacaagcacaaattgaaaacaaaagttt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtaggtaaaacacccatacatattgaaaaaacaagcacaaattgaaaacaaaagttt 320
Query: 121 aacgttatattactttt------cctacgattaggaaatgtcagcgtgtctctgtacaag 174
||||||||||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct: 321 aacgttatattacttttacctttcctacgattaggaaatgtcagtgtatctctgtacaag 380
Query: 175 gactgggataatttgcagggattttgtcagaaaaagaattg-aaaaacccaaattacc 231
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gactgggataatttgcagggattttgtcagaaaaagaattggaaaaacccaaattacc 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 638
Length adjustment: 9
Effective length of query: 222
Effective length of database: 629
Effective search space: 139638
Effective search space used: 139638
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
