BAC Information

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BAC

Clone NameMSMg01-133L19
Chromosome14 (Build37)
Map Location 116,272,493 - 116,273,023
singlet/doubletsinglet
Overlap geneGpc5
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133L19.T7 (MSMg01no133_l19.b1)MSMg01-133L19.TJ (MSMg01no133_l19.g1)
ACCAG340634AG340635
length715712
length of high quality
(start - end)
656 (60 - 715)283 (69 - 351)
definitionCHROMAT_FILE: MSMg01no133_l19.b1 PHD_FILE: MSMg01no133_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:37 2005CHROMAT_FILE: MSMg01no133_l19.g1 PHD_FILE: MSMg01no133_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTAAACGACTCCTATTTCAAGAAGAGCGCGGAATTCCTGG
GATTCCATCTTTTTTTTTTCTTTAGACACATATTTTACTGATAATGTCTA
AAATTTTTGAACTGCTGTATGAAGACATTTTCTCTTGTGTGTGTGTGCTT
CTAGAATCAAAATCTCTCTATGATGATAGTGAAATGCTTTACCATTGTGC
TATGCCCCATTGTGGTGAAAGATATTCAATATTTTATGTCTATAATACTT
TCCTGGGCGAGTGAGATAGATCAATTGCAAAAGGCATTCACTTCCACGCC
TAGTGACCTGAATTTGATTCCCAGAACTCCCAGGAAGGGAGGAGAAAGCA
GAATCTATTAAGTTATTCTCTGACCTCCATACATGTACTACATCATGCAT
GTTGGCTTACAAATATATACTTGCACTATAAATAAATAACAGTAAATATA
GAGATAAAAATAAATATAAAAAGTGAATTACAGGGCAAGAAAGATGGTGA
GGCTAGCAAAGGCTGCCATCCCTGCCTTCCTGGACTTGATTCCCAGCACC
AAAATGATAGATGCAAAAGTAAGTTCTTCCAAATGTTCCTGCCATACACG
TGCACACGTGTTCACACATACACATAGTAAAATATAATATTTAAAAATAA
TGTTAACTTAACAACCTTCCTTGTATGTCTCCCCCACACACCCTGGTACA
TAAATGAAAGGAATA
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAGACTTTTATCATGAATGGGT
GTTGGATCTTGTCAACTGCTTTCTCCACATCTAAAGAGATGATCATGTGG
TTTTTGTCTTTGAGTTTGTTTATATGATGGATTACAATGATGGATTTCCT
TATATTAAACCATCCCTGTATCCCTGGAATAAAACCTACTTGGTCAGGAT
GGATGATTGTTTAAATTTGTTCTTGGATTCGGTTAGCGAGAATTTTATTG
AGGATTTTAACATCTTTATTCATAAGAGAAATTAGTATGAAGTTCTCTAT
CTTTTCGTTTCCCTNTCCGCCCTAGGTATCAGAATAATTGTGGCTTCATA
GAATCAGTTGGATAAAAAAAAATTTACTTCTATTTTGTGGAATAGTTTGT
GCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTA
AACCCATCTGGTCCTGGGCTTTTTTTGGTTGGCAGACTCTTAATGACTGC
TTCTATTTCTTTAGGGGATATAGGACTGTTTACATTGTTAACTTGATCCT
GGCTTAACTTTGGTACCTGATATCTGCCTAGAAATTTGTCCATTTCATCC
AGTGTTTCCAGTTTTGTTGAGAATAGCCTTTTTAAAACGATCTGACTGTA
TTTTGGATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_l19.b1 MSMg01no133_l19.b1 CHROMAT_FILE:
MSMg01no133_l19.b1 PHD_FILE: MSMg01no133_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:37 2005
         (656 letters)



>mm_chr14_116271968_116273023
          Length = 1056

 Score = 1011 bits (523), Expect = 0.0
 Identities = 529/531 (99%)
 Strand = Plus / Minus

                                                                        
Query: 126  tgctttaccattgtgctatgccccattgtggtgaaagatattcaatattttatgtctata 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tgctttaccattgtgctatgccccattgtggtgaaagatattcaatattttatgtctata 997

                                                                        
Query: 186  atactttcctgggcgagtgagatagatcaattgcaaaaggcattcacttccacgcctagt 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  atactttcctgggcgagtgagatagatcaattgcaaaaggcattcacttccacgcctagt 937

                                                                        
Query: 246  gacctgaatttgattcccagaactcccaggaagggaggagaaagcagaatctattaagtt 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  gacctgaatttgattcccagaactcccaggaagggaggagaaagcagaatctattaagtt 877

                                                                        
Query: 306  attctctgacctccatacatgtactacatcatgcatgttggcttacaaatatatacttgc 365
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 876  attctctgacctccatacatgtactacatcatgcatgttggcttacaaatatatacttac 817

                                                                        
Query: 366  actataaataaataacagtaaatatagagataaaaataaatataaaaagtgaattacagg 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  actataaataaataacagtaaatatagagataaaaataaatataaaaagtgaattacagg 757

                                                                        
Query: 426  gcaagaaagatggtgaggctagcaaaggctgccatccctgccttcctggacttgattccc 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  gcaagaaagatggtgaggctagcaaaggctgccatccctgccttcctggacttgattccc 697

                                                                        
Query: 486  agcaccaaaatgatagatgcaaaagtaagttcttccaaatgttcctgccatacacgtgca 545
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 696  agcaccaaaatgatagatgcaaaagtaagttcttccaaatgttcctgccatacatgtgca 637

                                                                        
Query: 546  cacgtgttcacacatacacatagtaaaatataatatttaaaaataatgttaacttaacaa 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  cacgtgttcacacatacacatagtaaaatataatatttaaaaataatgttaacttaacaa 577

                                                               
Query: 606  ccttccttgtatgtctcccccacacaccctggtacataaatgaaaggaata 656
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  ccttccttgtatgtctcccccacacaccctggtacataaatgaaaggaata 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)