Query= MSMg01no133_m02.b1 MSMg01no133_m02.b1 CHROMAT_FILE:
MSMg01no133_m02.b1 PHD_FILE: MSMg01no133_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:39 2005
(336 letters)
>mm_chr14_118735358_118736093
Length = 736
Score = 580 bits (300), Expect = e-170
Identities = 312/316 (98%)
Strand = Plus / Minus
Query: 17 aaaggatggaagatgcaaagaaacaagcagtctagcccagtgcttctcaaccttgataat 76
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 736 aaaggatggaagatgcaaagaaacaagcagtctagtccagtgcttctcaaccttgataat 677
Query: 77 gctgcaaccctttcccacaaaattactgtcattgttacttcataactgtaattttgccat 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gctgcaaccctttcccacaaaattactgtcattgttacttcataactgtaattttgccat 617
Query: 137 tgtaatgttcaaattgtaataactgttatgagttttaaatttctatattttctggtggta 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtaatgttcaaattgtaataactgttatgagttttaaatttctatattttctggtggta 557
Query: 197 ttaggcaacccctgggaaagggtcaaactgctctactctctggtagggtaggcactggaa 256
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 556 ttaggcaacccctgggaaagggtcaaactgctctactctctggcagggtaggaactggaa 497
Query: 257 agagacattgggaagaagacagagattaacttcatctctcacccctttgcagtggctagc 316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 496 agagacattgggaagaagacagagattaacttcatctctcaccccttcgcagtggctagc 437
Query: 317 gctccaaaggtcatgt 332
||||||||||||||||
Sbjct: 436 gctccaaaggtcatgt 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_m02.g1 MSMg01no133_m02.g1 CHROMAT_FILE:
MSMg01no133_m02.g1 PHD_FILE: MSMg01no133_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:39 2005
(313 letters)
>mm_chr14_118578957_118579665
Length = 709
Score = 412 bits (213), Expect = e-119
Identities = 280/311 (90%), Gaps = 20/311 (6%)
Strand = Plus / Plus
Query: 1 aggttttaagtgcagagcaaagattacagattatgacttccatttagattttgttacttt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggttttaagtgcagagcaaacattacagattatgacttccatttagattttgttacttt 260
Query: 61 ctgaattataaatgtccttcccaagagcgacatccctctgcctgcctgctcttcagcttc 120
|||||||||||| | |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ctgaattataaacgcccttcccaagagcgacatccctctgcctgc----tcttcagcttc 316
Query: 121 tgagaagtcatctctcaaatctgccattttttcatgttatccagtaagccgcttcccggg 180
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 317 tgagaagtcatctcccaaatctgccattttttcatgttatccagtaagcggcttcacggg 376
Query: 181 acaaaaaaagtcactgcttgctctcaacctgatgtgtgtccgtccgtcccccccccccgc 240
||||||||||||||||||||||||||||||||||| || ||||| ||||| |
Sbjct: 377 acaaaaaaagtcactgcttgctctcaacctgatgt-----cg-----cccccacccccac 426
Query: 241 ccc-ccacctttatccccaccccagggttctactttaaagcgggcgggcgggcgctattt 299
||| || || | ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 427 cccacc-cc---a-ccccaccccagggttctgctttaaagcgggcgggcgggctttattt 481
Query: 300 cctgccctttg 310
|||||||||||
Sbjct: 482 cctgccctttg 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 709
Length adjustment: 9
Effective length of query: 304
Effective length of database: 700
Effective search space: 212800
Effective search space used: 212800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
