BAC Information

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BAC

Clone NameMSMg01-133N09
Chromosome14 (Build37)
Map Location 35,282,209 - 35,282,401
singlet/doubletsinglet
Overlap geneBmpr1a
Upstream geneFrmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2
Downstream gene9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133N09.T7 (MSMg01no133_n09.b1)MSMg01-133N09.TJ (MSMg01no133_n09.g1)
ACCAG340704AG340705
length704737
length of high quality
(start - end)
193 (116 - 308)70 (241 - 310)
definitionCHROMAT_FILE: MSMg01no133_n09.b1 PHD_FILE: MSMg01no133_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:45 2005CHROMAT_FILE: MSMg01no133_n09.g1 PHD_FILE: MSMg01no133_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTTGCGGCGCTAAACGACTACTTTTCATAGCGGGCCGCGGAATTCT
AGGTCTTCAAGAATATACAGGGAAACCCTGTCTGGGAAAAACAAACAAGA
ACCATGGTCTGTCACCAGTGACATAATACTGAGCCCCATTTACTGAACAC
TGCCAGTTCTATGTGTTAAGTTCTACAGATTCATTGTCTTGTTCAGTTCC
GTAAGTAACCTATTAGAGAAGCGTACCTATTCATTCTATACTATAGACAA
CCTCATGAGACATCAGAGACTATACAGAGACTCCACACCAATCAATGGCA
GTCATTTAATGATTTGGATAAAGGGAACCTTATACACTGTTGGTGGTAAA
CTAAACTAGTCCAGCAATGGACAGCAGTATGGCAGCTCCCTATAAACTCT
AATACAATAGTTCTACCATGCAACCCATCTATGCCACTCCTGTGTATTTA
TTTACTCTGAAGATTCCAAAGCAACATGTCAAGAGATGTCTGCTACATTA
TTTACAATAGCTAATTTACTGAGCCATCTTACGCATCACCATCTAGGAAA
CGGCCAAAAACATATGTGTTACATACTCACCACCTTACTTTTCTAGAACT
ATTTCTTTGTCGGAAAATGTATGCAAACATGGAAAAAACCATTAAGTGAA
TTACATGTCTCACATTTTATGTATCTCGTGTTCTATTATTTTGTGCTTCC
TTAC
ATACAGTGAGTAGGACTGGCGGTCGCCTGTTCCCCGACATTCAGGCGACA
CCATAGAATTATCCGCGAAATTCCAGGACAGTCAGGGCTGCACAGAGAAA
CCCTGTCTCAAAAAATTCCACACCAAACAAACAAACAAACTAACAAAAAC
ATCATGAAATTTGCAGGTAAATAGGTGAAACTAGAATAAAACAAATACAT
TCTGAGCGAGATAACCCAGATCCAGAAAGAATAATATGGTCTGTACTCTA
AGTAGATATTAGCCATTGAGTAAATGATAACCAAGCTACAGTCAGTATAC
CTAGAAAGGTCAGATGATTTTTTTGAATCTGGAGGGGTGCATGGCTCTTC
CTGTTTTTGTGTTTTCCCCCCCCCCCCCCAGGTGTACTGTGTTGTCTGGT
GACAGGATCAGGAGGGGACACAAATGAAAACAGAGACAGGATGGAAGGAG
AGATATGGTTGCAATTGGTAACCAGGCTTTTTACATTCGTTTATTGACCC
GTATTCTCTATTCCATCCCACGCTTTTCGACTACTTATCGTATCTTCTCC
TATCTGTTTACTTCTAATAAACGCCTAATATGGTACCTTCATCCTGTTCC
TCTTTTTTTCCTTCCATTTCATCATTTTTCCAAAATGTTCCCTCTCACTG
CATTCCTATCTCACCCCTATTCTTTTTCCCTTTTAAACATTAATAATCAA
CCATTGCCTACTTGATACCTGGTCCCCCACTATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_n09.b1 MSMg01no133_n09.b1 CHROMAT_FILE:
MSMg01no133_n09.b1 PHD_FILE: MSMg01no133_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:45 2005
         (193 letters)



>mm_chr14_35282009_35282601
          Length = 593

 Score =  342 bits (177), Expect = 6e-99
 Identities = 189/193 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgacataatactgagccccatttactgaacactgccagttctatgtgttaagttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgacataatactgagccccatttactgaacactgccagttctatgtgttaagttcta 260

                                                                       
Query: 61  cagattcattgtcttgttcagttccgtaagtaacctattagagaagcgtacctattcatt 120
           || |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 261 catattcattgtcttgttcagttccttaagtaacctattagagaagcatacctattcatt 320

                                                                       
Query: 121 ctatactatagacaacctcatgagacatcagagactatacagagactccacaccaatcaa 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ctatactatagacaacctcatgagacatcagagactagacagagactccacaccaatcaa 380

                        
Query: 181 tggcagtcattta 193
           |||||||||||||
Sbjct: 381 tggcagtcattta 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)