Query= MSMg01no134_b21.b1 MSMg01no134_b21.b1 CHROMAT_FILE:
MSMg01no134_b21.b1 PHD_FILE: MSMg01no134_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:12 2005
(790 letters)
>mm_chr14_112716854_112718043
Length = 1190
Score = 1410 bits (729), Expect = 0.0
Identities = 750/757 (99%), Gaps = 2/757 (0%)
Strand = Plus / Minus
Query: 1 tcaggctttgaacgatattaatgtctactcaatttctcatcacaatctctggtctcttat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 755 tcaggctttgaatgatattaatgtctactcaatttctcatcacaatctctggt-tcttat 697
Query: 61 atatacagaatgcatgattatccctgcttctgctgaaatgaaatactctccctaccatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 atatacagaatgcatgattatccctgcttctgctgaaatgaaatactctccctaccatta 637
Query: 121 tgggcttcagctcccggtaaccataagccaaaagaaacctttactataagttgctctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgggcttcagctcccggtaaccataagccaaaagaaacctttactataagttgctctagg 577
Query: 181 ttattatcttccatcatagcaaaaaactcagactaataatgtacactgactctttgattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttattatcttccatcatagcaaaaaactcagactaataatgtacactgactctttgattg 517
Query: 241 aaaggttatcagaatcacgtgtgctgatgtttgagctttataacaaaattatttgctagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaaggttatcagaatcacgtgtgctgatgtttgagctttataacaaaattatttgctagg 457
Query: 301 ttatcaaatgcttggtatttattcttttttctagtgaaagaatatgaattaattgggcaa 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 456 ttatcaaatgcttggtatttattcttctttctagtgaaagaatatgaattaattgggcaa 397
Query: 361 attcttgtctactataatacttatatggaattctgtttgctaatttttcttagttaattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 attcttgtctactataatacttatatggaattctgtttgctaatttttcttagttaattc 337
Query: 421 aacaacatatgacattacattaaagaataattagtttctatttgaagattacatagatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aacaacatatgacattacattaaagaataattagtttctatttgaagattacatagatgc 277
Query: 481 ttcccaaacacacagttaaatggaattcagttttcttgctttttttctttgttttttcat 540
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 276 ttcccaaacatacagttaaatggaattcagttttcttgc-ttttttctttgttttttcat 218
Query: 541 aacttttattattaatcagtttaataatgaggtatcatcatatctcacacaatccaacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aacttttattattaatcagtttaataatgaggtatcatcatatctcacacaatccaacca 158
Query: 601 cagtgaatctcttgcttcctgtcaaaatcgtagcctcttttctattaatcattaatgtta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cagtgaatctcttgcttcctgtcaaaatcgtagcctcttttctattaatcattaatgtta 98
Query: 661 cgaaaacacacatatatatgtgtgtattctcatgcctatacacatgtaggaaagaagagg 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 97 cgaaaacacacatatatatgtgtgtattctcatgcctatacacacgtaggaaagaagagg 38
Query: 721 atatataaatagtcatctacagaaacgaataaataca 757
||||||||||||||||||||||||| |||||||||||
Sbjct: 37 atatataaatagtcatctacagaaatgaataaataca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 790
Length of database: 1190
Length adjustment: 10
Effective length of query: 780
Effective length of database: 1180
Effective search space: 920400
Effective search space used: 920400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_b21.g1 MSMg01no134_b21.g1 CHROMAT_FILE:
MSMg01no134_b21.g1 PHD_FILE: MSMg01no134_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:12 2005
(722 letters)
>mm_chr14_112596684_112597804
Length = 1121
Score = 1226 bits (634), Expect = 0.0
Identities = 700/722 (96%), Gaps = 1/722 (0%)
Strand = Plus / Plus
Query: 1 gaaaagactaaaggcatcatagaaatttactttcatttgaaatgagtgttgtctaagaaa 60
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 201 gaaaagactaaaggcatcatagaaatttactttaaaatgaaatgagtgttgtctaagaag 260
Query: 61 ctatttcaggttgtgcagattttaaaacatcactccacttttttccctccacacaattag 120
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 261 ctatttcaggttgtgcagattttaaaacatcactccatttttttccatccacacaattag 320
Query: 121 aatgtaaataccttgcaaaagcatttgaatatttcaataaaatgaagatttaaaaccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtaaataccttgcaaaagcatttgaatatttcaataaaatgaagatttaaaaccagt 380
Query: 181 gaataactagctacagaaagttttatttaggtttattggtgggaaaaaaacttgctggtg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gaataactagctacagaaagttttatttaggtttattggtggg-aaaaaacttgctggtg 439
Query: 241 cagagaagcaaataaatgttgctgtaaattagcttgtctgtctctcttccttccttccct 300
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 cagacaagcaaataaatgttgctgtaaattagcttgtctgtctctcttcctcccttccct 499
Query: 301 tccctcccttcccctgtccttctgttcctcttagattccccaaccccaactcttcttatt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 tccctcccttcccctgtccttctgttcctcttagattccccacccccaactcttcttatt 559
Query: 361 tctatttcctaatattatcctagcactgtgctgctgtggaacttctaggaaataagcaac 420
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctatttcctaatagtatcccagcactgtgctgctgtggaacttctaggaaataagcaac 619
Query: 421 agacactccttccatgacatcaaactttttaaaatagtgttttccgatcttgtttattaa 480
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 620 agacactccttccatgacatcaaacttttaaaaatagtattttccgatcttgtttattaa 679
Query: 481 gactgccatatgacattttcccctctaggaggtgaatttttgaatgaggtacatgagtgt 540
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 gactgccatatgacatttccccccctaggaggtgaatttttgaatgaggtacatgagtgt 739
Query: 541 ttagtagcctcacactgtattttgttgtgtgtaagttccttagcttttcatgagggttca 600
|||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 740 ttagtagcttcacactgtattttgttatgtgtaagttccttagcttttcgtgagggttca 799
Query: 601 agaatactgtgacaatgtagcaatggtagagaagccaagtctatgccttgggaatgtttg 660
||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct: 800 agaatactgtgacaatgtagcaatggtagagaagccaagtccataccttgggaacgtttg 859
Query: 661 tagagttgatggtcgactccactgggttaacgaatgcatcctatgtgcaccttgcagctc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tagagttgatggtcgactccactgggttaacgaatgcatcctatgtgcaccttgcagctc 919
Query: 721 tg 722
||
Sbjct: 920 tg 921
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1121
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1111
Effective search space: 791032
Effective search space used: 791032
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
