Query= MSMg01no134_o14.b1 MSMg01no134_o14.b1 CHROMAT_FILE:
MSMg01no134_o14.b1 PHD_FILE: MSMg01no134_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:49 2005
(797 letters)
>mm_chr14_105719700_105720897
Length = 1198
Score = 1083 bits (560), Expect = 0.0
Identities = 587/596 (98%), Gaps = 1/596 (0%)
Strand = Plus / Minus
Query: 5 gaattc-aagaccaagggagaccctatctagaccagagttgcttatgggcctctaaagag 63
|||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 596 gaattcaaagaccaagggagaccataactagaccagagttgcttatgggcctctaaagag 537
Query: 64 aagccagaaattcaaactatcatcacacatgttaggaagcaagacagatgaaaggctgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aagccagaaattcaaactatcatcacacatgttaggaagcaagacagatgaaaggctgtg 477
Query: 124 cactgcacagggatgaaggatagggagagagacggatgcaactgcctccttgctcatgag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cactgcacagggatgaaggatagggagagagacggatgcaactgcctccttgctcatgag 417
Query: 184 tctggaagtcagtcactgccagcaacacagtcctgtcacaaacagccatacactataaat 243
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 416 tctggaagtcagtcactgccagcaacacagtcctgtcacaaacaggcatacactataaat 357
Query: 244 ggtgctgtgagcagagcaaagatcaggcaccttaagtccaagtgactgaaatgccacaac 303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 356 ggtgctgtgagcagagcaaagatcaggcaccttaagtccaagtgaccgaaatgccacaac 297
Query: 304 caacacagtaattggactggttcagttggctaaagccacagaggacacactggtaatttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caacacagtaattggactggttcagttggctaaagccacagaggacacactggtaatttg 237
Query: 364 gggaggataacaattccttttaactgttccaaagaaagagaagaaggaggaggaatagga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gggaggataacaattccttttaactgttccaaagaaagagaagaaggaggaggaatagga 177
Query: 424 ggaggaagatgaaacaaacaagcaaacaaaacaaggtcctcgtataagacacatcacatc 483
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 176 ggaggaagatgaaacaaacaagcaaacaaaacaaggtcctcgtataaggcacatcacatc 117
Query: 484 atcacataccgttcctccatttgagtcatctctatggaaggcgggacgtggaacagctag 543
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 atcacataccgttcttccatttgagtcatctctatggaaggcgggacgtggaacagctag 57
Query: 544 tgaacagcagctctcatgagctgttactgggtctcttctcatcgaacttaggcacc 599
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 56 tgaacaggagctctcatgagttgttactgggtctcttctcatcgaacttaggcacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 797
Length of database: 1198
Length adjustment: 10
Effective length of query: 787
Effective length of database: 1188
Effective search space: 934956
Effective search space used: 934956
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_o14.g1 MSMg01no134_o14.g1 CHROMAT_FILE:
MSMg01no134_o14.g1 PHD_FILE: MSMg01no134_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:49 2005
(746 letters)
>mm_chr14_105630384_105631529
Length = 1146
Score = 1326 bits (686), Expect = 0.0
Identities = 734/754 (97%), Gaps = 9/754 (1%)
Strand = Plus / Plus
Query: 1 atcaggagcctggggctgagactcttcacagcctgatggactaggatgcagagctagaat 60
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 194 atcaggagcctggggctgagactcttcacagcttgatgaactaggatgcagagttagaat 253
Query: 61 agggtgagagatctggctataaacctcaaggcctgg--cccccaggtcagctgaggcccc 118
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 254 agggtgagagatctggctataaacctcaaggcctggccccccca-gtcagctgaggcccc 312
Query: 119 accactggagtttccattttctgctgtcagtttaggtaattcgttttctactgttttgga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 accactggagtttccattttctgctgtcagtttaggtaattcgttttctactgttttgga 372
Query: 179 cactcgacgcactcttttctttttgctgtaatgtgcttttagaatctgctacaattcctg 238
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 373 cactcgacacactcttttctttttgctgtaacgtgcttttagaatctgctacaattcctg 432
Query: 239 gagtcatgataggcttcattccagccctttaacccattaatggctattttctcttttatc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagtcatgataggcttcattccagccctttaacccattaatggctattttctcttttatc 492
Query: 299 attcatttgaggtactcagacacaccaactacttccagttatgtaagatttggacctgtg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 attcatttgaggtactcagacacaccaactacttccagttatgtaagatttggacctgtg 552
Query: 359 agttccggggatttcagttctaaaagctgacatatatgatgcacacatacgcacat---- 414
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 553 agttccggggatttcagttctaaaagctgacatatatgatgcacacacacgcacatgcac 612
Query: 415 --gcacatgcattggtgttttgtctgcatgtatgaccgtgaaggtgccagattccctgga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acgcacatgcattggtgttttgtctgcatgtatgaccgtgaaggtgccagattccctgga 672
Query: 473 actggagttccagacagttgtgagctcccattcaggtgctgggaattgaacccaggttct 532
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 673 actggagttccagacagttgtgagctcccattcaggtactgggaattgaacccaggtcct 732
Query: 533 ttgagagcagctagtactcttaactgctgagtcagagctccatcctattgtattatattt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ttgagagcagctagtactcttaactgctgagtcagagctccatcctattgtattatattt 792
Query: 593 aattataacagtttagaactctaacaataaaatgaaaagagaaacaaacatactataatt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aattataacagtttagaactctaacaataaaatgaaaagagaaacaaacatactataatt 852
Query: 653 gaggttatttaattttcaattacttaccactgcagagtcgtgcaggttgcgtgttttagc 712
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 853 gaggttatttaattttcaattacttaccactgcagagtcgtgcaggttgcgtgtttcagc 912
Query: 713 ttcacgtgctttggtgtccttctcgttccagaga 746
|||||||||||||| ||||||||||||| |||||
Sbjct: 913 ttcacgtgctttggcgtccttctcgttctagaga 946
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space: 836096
Effective search space used: 836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
