Query= MSMg01no135_d01.b1 MSMg01no135_d01.b1 CHROMAT_FILE:
MSMg01no135_d01.b1 PHD_FILE: MSMg01no135_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:15 2005
(212 letters)
>mm_chr14_69941255_69941866
Length = 612
Score = 358 bits (185), Expect = e-103
Identities = 201/208 (96%), Gaps = 4/208 (1%)
Strand = Plus / Plus
Query: 5 gaattctatagtgtgtcctctaagggataacaagaagagattggtacagagtcgatacaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatagtgtgtcctctaagggataacaagaagagattggtacagagtcgatacaa 264
Query: 65 atacaaccccccacccccacccctgtgttttccactccaggttcattgattccacaaata 124
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 atacaactccccacccccacccctgtgttttccactccaggttcattgagtccacaaata 324
Query: 125 taaaatctgtagctacaaaacatgtgacatgatggtaccctcttcttcccctgctatcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaatctgtagctacaaaacatgtgacatgatggtaccctcttcttcccctgctatcct 384
Query: 185 ggaatcatttntgtannntgtaacaact 212
|||||||||| ||| ||||||||||
Sbjct: 385 ggaatcatttc-gta---tgtaacaact 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space: 122409
Effective search space used: 122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no135_d01.g1 MSMg01no135_d01.g1 CHROMAT_FILE:
MSMg01no135_d01.g1 PHD_FILE: MSMg01no135_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:15 2005
(622 letters)
>mm_chr14_70021003_70022024
Length = 1022
Score = 1044 bits (540), Expect = 0.0
Identities = 603/624 (96%), Gaps = 4/624 (0%)
Strand = Plus / Minus
Query: 1 actcacacagtgggactcaggtcccagggcttcatcagaagcatcggctcctcaaggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 actcacacagtgggactcaggtcccagggcttcatcagaagcatcggctcctcaaggcct 763
Query: 61 tgtatgtgacccaacagttggtgaccacttgtggctgtccccacactccccctccacaca 120
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgtatgtgatctaacagttggtgaccacttgtggctgtccccacactccccctccacaca 703
Query: 121 caacaggacagatcactgttacatcctcacagacagcaactggttcaaactctatgtcta 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 702 caacaggacagatcactgttacatcctcactgacagcaactggttcaaactctatgtcta 643
Query: 181 ctgctcatgagcttgggaaccccaggtggacttaggtttttctagacttaataatcctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctgctcatgagcttgggaaccccaggtggacttaggtttttctagacttaataatcctgt 583
Query: 241 agacttgaaagaatacatttcttaaaacaatctttacgtgaaaatgagaaacacctgttt 300
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 582 agacttgaaagaataaatttcttaaaacaatctttacgtgaaaatgagaaaaacctgttt 523
Query: 301 catgggacgctttgtaaaaagaatcaaagaaaaagctccttgaatctctgtcccacaatt 360
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct: 522 catgggacgctttgtaaaaagaatcaaagaaaaagcttcttgaatctctgacccacagtt 463
Query: 361 gatgctcaaatatgaatagctgatgtatcttgtatcaggctgctctgtgctcctgattcc 420
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 462 gatgctcaaatatgaatagctggtgtatcttggatcaggctgctctgtgctcctgattcc 403
Query: 421 agtcgagttgttcaagcacctatgatagt-gtgggctgatgctcagctgtgaacattg-g 478
||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct: 402 agttgagttgttcaagcacctatgata-tcgtgggctgatgctcagctgtgaacattgag 344
Query: 479 gtctgggcttaattttgaactttgattcctccaattatgcactggagctggggatgaact 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 g-ctgggcttaattttgaactttgattcctccaattatgcactggagctggggatgaact 285
Query: 539 ttggcaggtccttctagatccaactttaataaaccgttagttaaaacccagaaattctca 598
||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||
Sbjct: 284 ttgtcaggtccttctagatccagctttaataaaccattatttaaaacccagaaattctca 225
Query: 599 tttatacagtatactctgttgcag 622
||||||||| ||| ||||||||||
Sbjct: 224 tttatacagcatagtctgttgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
