Query= MSMg01no135_d06.b1 MSMg01no135_d06.b1 CHROMAT_FILE:
MSMg01no135_d06.b1 PHD_FILE: MSMg01no135_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:16 2005
(673 letters)
>mm_chr14_117877938_117879010
Length = 1073
Score = 1004 bits (519), Expect = 0.0
Identities = 536/543 (98%), Gaps = 3/543 (0%)
Strand = Plus / Minus
Query: 133 acaaagcttactaaaaatgtcatgttcacactcagtggagcaatgtaaattctgtagcct 192
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1073 acaaagcttactaaaaatgtcatgttcacactcagtggagcaatgtaagttctgtagcct 1014
Query: 193 tattgtatagaaaataaaccaaagccacgtcattgaactgctcagcatagatggtgcccc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 tattgtatagaaaataaaccaaagccacgtcattgaactgctcagcatagatggtgcccc 954
Query: 253 tcccccagatggactgaggtatccagtttgaaattctttcatgaaaaaaaa---atacaa 309
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 953 tcccccagatggactgaggtatccagtttgaaattctttcatgaaaaaaaatacaaacaa 894
Query: 310 acaaacaaacaaacaaagaaaaagaaaactccacctctcctaaaatgtaataacaggatt 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 acaaacaaacaaacaaagaaaaagaaaactccacctctcctaaaatgtaataacaggatt 834
Query: 370 tatcttccattcatcaggtttaggttattattataaatgaaacaaaaacaacaacaaaca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tatcttccattcatcaggtttaggttattattataaatgaaacaaaaacaacaacaaaca 774
Query: 430 ataaaaaccctgcaaataggtacttaattatttcaaaactactcctacttgttctgtaat 489
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 773 ataaaaaccctgcaaataggtacttaattatttcaaaactactcctacttgtactgtaat 714
Query: 490 tcttgctgccgactgtgtaatgcctgagatccctgtgagcagggctttgtgctaatcata 549
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tcttgctgccaactgtgtaatgcctgagatccctgtgagcagggctttgtgctaatcata 654
Query: 550 cgactgacaagaccaaactactacttagtcactgcctctggctcctcaatattgcagccc 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cgactgacaagaccaaactactacttagtcactgcctctggctcctcaatattgcagccc 594
Query: 610 agtttaatgttgaatttattttaattaaatgcccaagcagcattaggaatgtgttattaa 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agtttaatgttgaatttattttaattaaatgcccaagcagcattaggaatgtgttattaa 534
Query: 670 ttt 672
|||
Sbjct: 533 ttt 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_d06.g1 MSMg01no135_d06.g1 CHROMAT_FILE:
MSMg01no135_d06.g1 PHD_FILE: MSMg01no135_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:16 2005
(557 letters)
>mm_chr14_117752782_117753738
Length = 957
Score = 915 bits (473), Expect = 0.0
Identities = 525/559 (93%), Gaps = 31/559 (5%)
Strand = Plus / Plus
Query: 1 agggaccatttttc-aatatcccatgataaccttgtgaagaagatggataaatggggacc 59
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aggggccatttttcaaatatcccatgataaccttgtgaagaagatggataaatggggacc 287
Query: 60 aggagacagggaggacggggatttgtagctgattgaacagttgtaatttaaaggtagatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aggagacagggaggacggggatttgtagctgattgaacagttgtaatttaaaggtagatt 347
Query: 120 gatgtgctgacatcctcatagaggttgatgcacacaatgtcatgccgtttgatgctggtc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gatgtgctgacatcctcatagaggttgatgcacacaatgtcatgccgtttgatgctggtc 407
Query: 180 ttaattttctctatctactccatcact-tttaccaacaatctgtatactgacaggtagca 238
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 408 ttaattttctctatctactccatca-tgtttaccaacaatctgtatactgacaggtagca 466
Query: 239 tgctcatcaagttcactaaataggcctgaaaattaacccaagcatgtcacaatcaatatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgctcatcaagttcactaaataggcctgaaaattaacccaagcatgtcacaatcaatatt 526
Query: 299 caagaatatatatatatacatacatatatatatacatatatatatatatatatacatata 358
|||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 527 caagaatatatatatata------------------tatatatatatatatata--tata 566
Query: 359 tatgtatgtatgtatgtatcaagtaagtcctttcatctggctaagtgtatggctaagagc 418
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tatgtatgtat--------caagtaagtcctttcatctggctaagtgtatggctaagagc 618
Query: 419 aaagtaggtcatcatttcagctaaaagtcacgtctggcattggggagctacacgcacaca 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 619 aaagtaggtcatcatttcagctaaaagtcacatctggcattggggagctacacgcacaca 678
Query: 479 ggtgaagcttaaggttgcatttattgatgaatgtgtggggaagtctaatggaaggcaagt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggtgaagcttaaggttgcatttattgatgaatgtgtggggaagtctaatggaaggcaagt 738
Query: 539 ttaagtggttatacatggc 557
|||||||| ||||||||||
Sbjct: 739 ttaagtggctatacatggc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
