BAC Information

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BAC

Clone NameMSMg01-135P01
Chromosome14 (Build37)
Map Location 20,115,639 - 20,116,071
singlet/doubletsinglet
Overlap genenone
Upstream geneNkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344
Downstream geneLOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135P01.T7 (MSMg01no135_p01.b1)MSMg01-135P01.TJ (MSMg01no135_p01.g1)
ACCAG342272AG342273
length709711
length of high quality
(start - end)
664 (46 - 709)642 (68 - 709)
definitionCHROMAT_FILE: MSMg01no135_p01.b1 PHD_FILE: MSMg01no135_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:10 2005CHROMAT_FILE: MSMg01no135_p01.g1 PHD_FILE: MSMg01no135_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAGACAACATAAAATTTTACAAGACCTAGGAATTTAGAGCTCC
ATGACACCACATTATTCTTGAGGCCTGTCAAGAGTTAAAAAACCCCTGGT
GCTATTAACACTAAAGTGTGAAACTCTTGCCTGGCACTAGGCTGATCCTA
GGCAGGGCTGCTAGTCTCTATTGTAAACATTTATCTAAGTTTCTGCAAAT
TCCTTTAGCAGTAATCTTGCTTGTATCTGGTAAATTTCAGTGTACCTTGT
CTTATTTGTGATTTGAAACTCCTGATAATTCCCTGTAATATAACAGCTCG
ACCAGACATTACATTCAGATTCAACACCTCTCTTGTGTGCATCTGTTTGT
CAATTCCTACGCTTTGCCCATCTGCTCGAGAGGACCCGTTCCACGCAGAC
ACAGGGGACCAGAGGGTCTGCGGCAAATTTCTATTATTAAAAGAAGCCCA
CACACCACCACCAACAACAACAACAACCCCCCCCCAAAGAAAAGACCCAA
CAGTAACACTTTACTGACTGGACGAGTTCCTTTACTGCATATGCAACCAT
TCCTCGATAGCTAGGTAATGTGCAACTCTGTCCTAGTTGGACTATCAAGG
TTAAGAAAATGGGAAGCCACTTATTCTGTTATGTGAAGCCATCATCAGTA
CTAGGTAGN
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTGGGAGGAAGAAGCA
GCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGCCAAAAGCGGCTGG
CGAAAGCCAGCGTACTGTTCAACCTCCCGGCAGTCGGTTTCAAGGTCCGC
CCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAATGCGCAGAGAGG
CAATGCGCAGAGAGGCAATGCGCAGAGAGATGCGCAGAGAGGCAGTGCGC
AGAGAGGCAGTGCGCAGAGAGGCAGTGCGCAGACTCATTCATTCCCAGAG
AGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGAGCCGAG
GGTGGGCGTGTCCACGCTCCGGTAGAATACTTACAAATTAAAGAACTTGC
CGAGTCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTGGTGCAGT
TAGACAGGCTCGCCGGCATGGCACTAACTCCTGCTGACTGGCAAACGATT
GTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGCGCT
TTGGCACGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCTGCTTTGA
CTCCAGAGCAGAGAGATTGGACTTTTGACTTGTTGACGGGTCAGGGAGCT
TATTCTGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_p01.b1 MSMg01no135_p01.b1 CHROMAT_FILE:
MSMg01no135_p01.b1 PHD_FILE: MSMg01no135_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:10 2005
         (664 letters)



>mm_chr14_20115009_20116071
          Length = 1063

 Score =  816 bits (422), Expect = 0.0
 Identities = 431/434 (99%), Gaps = 1/434 (0%)
 Strand = Plus / Minus

                                                                        
Query: 230  atctggtaaatttcagtgtaccttgtcttatttgtgatttgaaactcctgataattccct 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 atctggtaaatttcagtgtaccttgtcttatttgtgatttgaaactcctgataattccct 1004

                                                                        
Query: 290  gtaatataacagctcgaccagacattacattcagattcaacacctctcttgtgtgcatct 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 gtaatataacagctcgaccagacattacattcagattcaacacctctcttgtgtgcatct 944

                                                                        
Query: 350  gtttgtcaattcctacgctttgcccatctgctcgagaggacccgttccacgcagacacag 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  gtttgtcaattcctacgctttgcccatctgctcgagaggacccgttccacgcagacacag 884

                                                                        
Query: 410  gggaccagagggtctgcggcaaatttctattattaaaagaagcccacacaccaccaccaa 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  gggaccagagggtctgcggcaaatttctattattaaaagaagcccacacaccaccaccaa 824

                                                                        
Query: 470  caacaacaacaacccccccccaaagaaaagacccaacagtaacactttactgactggacg 529
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  caacaacaacc-cccccccccaaagaaaagacccaacagtaacactttactgactggacg 765

                                                                        
Query: 530  agttcctttactgcatatgcaaccattcctcgatagctaggtaatgtgcaactctgtcct 589
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  agtccctttactgcatatgcaaccattcctcgatagctaggtaatgtgcaactctgtcct 705

                                                                        
Query: 590  agttggactatcaaggttaagaaaatgggaagccacttattctgttatgtgaagccatca 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  agttggactatcaaggttaagaaaatgggaagccacttattctgttatgtgaagccatca 645

                          
Query: 650  tcagtactaggtag 663
            ||||||||||||||
Sbjct: 644  tcagtactaggtag 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space:   688662
Effective search space used:   688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)