BAC Information

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BAC

Clone NameMSMg01-136D16
Chromosome14 (Build37)
Map Location 87,828,577 - 87,828,945
singlet/doubletsinglet
Overlap geneTdrd3
Upstream geneLOC100043310, LOC100043311, Diap3, EG665324
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136D16.T7 (MSMg01no136_d16.b1)MSMg01-136D16.TJ (MSMg01no136_d16.g1)
ACCAG342487AG342488
length702780
length of high quality
(start - end)
369 (334 - 702)72 (80 - 151)
definitionCHROMAT_FILE: MSMg01no136_d16.b1 PHD_FILE: MSMg01no136_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:32 2005CHROMAT_FILE: MSMg01no136_d16.g1 PHD_FILE: MSMg01no136_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCCCNNNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGA
GGATCCGCGGAATTCACAGATGCCACATGCACAGGACCTGCACAGGTCTG
CACCAGGTCCTGTATATATTATAGCTTCCAGTTTAGAGTTTATGGGACTT
CTGAGTGTTAGAGCAAATGGATCTCTGATTCTTGTGCCTTCTCTTGGTTT
GTCCTGTCCAACTTCAATGAGATAGCTTTTGTGTTATCTTACTATATTTT
ATTTTATTATATTATATTTCAGTAGTATCTCTTAGAAGCCTGCTCCTTTC
TAATAAGAGAAAGAAAGTGGCAGGATCTGTTTGAGAGGAGAGGTGGAGAT
CAGATGGGAGGAGTACAGAGAAGGGAAACCAAAATCAGGATATAATATGT
GAGAAAATCTATTTTCAATAAAAAAAAATAAGAAGAACATCCTAGATACA
CAGAAACCTGTACCTACATATATTTTCCATATACTTTTGCTTAAAATGTT
ACCAATAACTATTAACAATTCAATTTATACAAGAAAACTATTGTAATAAG
GAAAGCATGTTAAAGACTACCAGCAATCCAGTTCAGACTTATTTTTCATG
AAAACATGAAACAGAACTAATTCAAAAGGTAAAATGTAGCCAATATAATG
TGGCCTAGTATTAATTCATAGCTAAATGTAAGAGAACTTATGAAATATTG
AA
CCCCACCCACGATGCAGTGGGAGGCCTGGAGGCCGCCCGTTCGTACCTGT
AGGTGACCTATAGAATGACCCGCACCGGGCTCTCTCCCCTCCTTCTCTGT
GAGTGTCTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGAGA
CACACANCACCCCNTCCACAACTCCTTCATGCCACTTTACCTTCTTCCTT
CCTCGCTTTTATTCCCGGCTTCCTCCCTTCTTCCTCCTCTTAGCCGCCCG
GCGGTTTTTTTTTTTTACAGTACAACCACACACCTCACCGCCCACACCTC
CCCCCCCCCCCAGCCCCACCCGCGCCTTTCACCTCAACTTTNCAAACCAC
GGGTCCACACAAAGGAAAAGAGATTTTTTTTTCTCCCCCCCACCCTCCTC
CTAAAAGATTTTTTATCCACCTTATGCTCCCCCACTGCCCCCCCCCACTA
CATCAATTTCCTCCCGCGCGCATCGTCCCCTTTTCCGTCTTCACTTCTCT
CTCATCTATTTACCCACAGTCTCTTTACCTGCCTCATCTACCTTCTATAC
CATCTTAGTGAACACCCACATATTATCCCCTACCTCACTCCTAACCCCCC
CAATACCCCCCAATCCACCATCACTCGCCGTCCTTCTCCCCCCCTATCCC
TTACATCTTCATCTCTTCCCTCCCCCCTCTCATTCCTCCTTTTCAACTCC
ATGTGTCCCTTTTTTACCCCCTTCTTCTTTTTTTTTTTTTCGCGCTCCCT
CCGCACCTCCGCACCGTCTCTATCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_d16.b1 MSMg01no136_d16.b1 CHROMAT_FILE:
MSMg01no136_d16.b1 PHD_FILE: MSMg01no136_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:32 2005
         (369 letters)



>mm_chr14_87828276_87829044
          Length = 769

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggagaggtggagatcagatgggaggagtacagagaagggaaaccaaaatcaggatat 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 agaggagaagtggagatcagatgggaggagtacagagaagggaaaccaaaatcaggatat 611

                                                                       
Query: 61  aatatgtgagaaaatctattttcaataaaaaaaaataagaagaacatcctagatacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aatatgtgagaaaatctattttcaataaaaaaaaataagaagaacatcctagatacacag 551

                                                                       
Query: 121 aaacctgtacctacatatattttccatatacttttgcttaaaatgttaccaataactatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaacctgtacctacatatattttccatatacttttgcttaaaatgttaccaataactatt 491

                                                                       
Query: 181 aacaattcaatttatacaagaaaactattgtaataaggaaagcatgttaaagactaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aacaattcaatttatacaagaaaactattgtaataaggaaagcatgttaaagactaccag 431

                                                                       
Query: 241 caatccagttcagacttatttttcatgaaaacatgaaacagaactaattcaaaaggtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caatccagttcagacttatttttcatgaaaacatgaaacagaactaattcaaaaggtaaa 371

                                                                       
Query: 301 atgtagccaatataatgtggcctagtattaattcatagctaaatgtaagagaacttatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atgtagccaatataatgtggcctagtattaattcatagctaaatgtaagagaacttatga 311

                    
Query: 361 aatattgaa 369
           |||||||||
Sbjct: 310 aatattgaa 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)