BAC Information

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BAC

Clone NameMSMg01-136G12
Chromosome14 (Build37)
Map Location 117,352,345 - 117,352,788
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136G12.T7 (MSMg01no136_g12.b1)MSMg01-136G12.TJ (MSMg01no136_g12.g1)
ACCAG342616AG342617
length695694
length of high quality
(start - end)
626 (56 - 681)450 (83 - 532)
definitionCHROMAT_FILE: MSMg01no136_g12.b1 PHD_FILE: MSMg01no136_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:47 2005CHROMAT_FILE: MSMg01no136_g12.g1 PHD_FILE: MSMg01no136_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAGGNNTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCATCCTATACATGACTGTGAGTATCCACTTCTGTA
TTTGCCAGGCACTGGCATAGTCTCACAAGAGACAGCTTGAAATTCTTCTT
TAGAATCCCTGTAACTCTCTTTCTGGTCTATGAAAGATAGCAAATTTCAC
ATGGAAAAGTTTAGCATTTTTCAAATGAGGAAAATAATTTACATTTTTAC
CTCTTTAGGAAGAGCAAAATGCTCCCGACCTTCTGTCTCACCCAATTCCT
TCCCTCCATCCACCCTTGAGGATTATTTTATCTCCTCCTCTTAGTGAGAT
TAAAGCATCCTTCCTTGAGCCATCTTTGTATTTCACTAATTTGGGTCTGT
GGATGGTAACACGGTTATCCTATAGCCACAGCTAATATCAACTTATAACT
GAGTACATGCCATGTTTGCCTTTCTGGGTCTGAGTTACCTCACTCAGGAT
GATGTTTCCAGTTCCACCATTTGCCTGCAAATTTTCATGAGACCATTGGC
TTTAATAGCTGAGTAATATTCCGCATTGTACATTGCTACTATTTCTTGAT
CCACTCTTCAGTTGAGGAAAATATAGGTCGTTTCCAGTTTCTGGATATTA
AGAATAAAGCTGCTATGAACATAGCCGAGCTAGTGTCCTTCTGGA
TATNNNNCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACTAAACCCATCTAG
TACTGGGCGTTTTTCAGTTGGGAGGCTATTAATGACTGCTTCTATTTCTT
TAGGGGTTTGGAGACTATTTAAATGGTTTATCTGATCCTGTTTTAACTTT
GGCACCTGGTATCTGTCTAGAAAATTGTCCACTTCATCCATATTTTCCAA
TTTTGTTGAGTATAAGCTTTTGTAGTAGGATCAGATGTTTTTTTTTCAAT
TTCCATGATTTCTGTTATGTCTCTCTCTTTCTCCCTTTTCATTTTTGATT
TTATTAATTTGGATAATGTCTCTTTCCCTCTGGTTAGTCTGGCTAAGGGT
TTATCTATCTTGTTTTTTTTTCCCCCCCTTTTTCTTCTGGATTTCTAGAT
AGAATCTGTCTGGAAAATAGACAAATGTATCCATTCTTATTGAGTTTTGG
GATTCCTTTCTCTTTAGGGAGGCTACACAATTGCTTCAGAAAGTCATGGT
CATAATATAGGCTTGCAAACAGGAGTGGTGGTCCATATTTCTAATCTGAG
NACTCAGAAAGCAATACCATATGGACCTCTGTGTGTATAAGGTCTGGGCT
GTTCAAATTAGTATATTCATCAACATTGACGTCTGAATTATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_g12.g1 MSMg01no136_g12.g1 CHROMAT_FILE:
MSMg01no136_g12.g1 PHD_FILE: MSMg01no136_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:47 2005
         (450 letters)



>mm_chr14_117352139_117352988
          Length = 850

 Score =  779 bits (403), Expect = 0.0
 Identities = 436/451 (96%), Gaps = 8/451 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccactaaacccatctagtactgggcgtttttcagttgggaggctattaatgactgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tccactaaacccatctagtactgggcgtttttcagttgggaggctattaatgactgcttc 266

                                                                       
Query: 61  tatttctttaggggtttggagactatttaaatggtttatctgatcctgttttaactttgg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tatttctttaggggtttggagtctatttaaatggtttatctgatcctgttttaactttgg 326

                                                                       
Query: 121 cacctggtatctgtctagaaaattgtccacttcatccatattttccaattttgttgagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacctggtatctgtctagaaaattgtccacttcatccatattttccaattttgttgagta 386

                                                                       
Query: 181 taagcttttgtagtaggatcagatgtttttttttcaatttccatgatttctgttatgtct 240
           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 387 taagcttttgtagtaggatctgatgattttttttcaatttccatgatttctgttatgtct 446

                                                                       
Query: 241 ctctctttctcccttttcatttttgattttattaatttggataatgtctctttccctctg 300
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 447 ctctctctctcccttttcatttttgatgttattaatttggataatgtctctttccctctg 506

                                                                       
Query: 301 gttagtctggctaagggtttatctatcttgttttttt-ttccccccctttttcttctgga 359
           ||||||||||||||||||||||||||||||||||||| ||       ||||| |||||||
Sbjct: 507 gttagtctggctaagggtttatctatcttgtttttttctt-------ttttttttctgga 559

                                                                       
Query: 360 tttctagatagaatctgtctggaaaatagacaaatgtatccattcttattgagttttggg 419
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttctagacagaatctgtctggaaaatagacaaatgtatccattcttattgagttttggg 619

                                          
Query: 420 attcctttctctttagggaggctacacaatt 450
           |||||||||||||||||||||||||||||||
Sbjct: 620 attcctttctctttagggaggctacacaatt 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)