Query= MSMg01no137_d19.b1 MSMg01no137_d19.b1 CHROMAT_FILE:
MSMg01no137_d19.b1 PHD_FILE: MSMg01no137_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:51 2005
(693 letters)
>mm_chr14_18498899_18499991
Length = 1093
Score = 1077 bits (557), Expect = 0.0
Identities = 642/693 (92%), Gaps = 37/693 (5%)
Strand = Plus / Minus
Query: 2 gaattccaggacagcctggccttcacagagaaaccctggccttagaaaaacaaaac-aaa 60
|||||||||||||||| || ||||||||||||| ||| ||||| |||||||||||| |||
Sbjct: 1057 gaattccaggacagccagggcttcacagagaaatcct-gccttggaaaaacaaaacaaaa 999
Query: 61 caaaacaaaacaaaacaaaacaaaacaaaacaaaacaaagcaaagcaaagcaaagcaaag 120
||||||||||||||||||||||||||||||||||||||| |||| |||| || |||||||
Sbjct: 998 caaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacacagcaaag 939
Query: 121 caaagcaaagcaaagcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaa 180
||||||||||||||| |||| |||||
Sbjct: 938 caaagcaaagcaaag-----------------------------------caaagcaaaa 914
Query: 181 caaaacaaaacaaaacaaaagcaataccaagaactcaggtccacacactctctggaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 caaaacaaaacaaaacaaaagcaataccaagaactcaggtccacacactctctggaggaa 854
Query: 241 cactggctattcgttgcttcctaaatatgtatgcatgtaatgcgcagtcactaaacgaac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 853 cactggctattcgttgcttcctaaatatgtatgcatgtaatgcgcagtcactcaacgaac 794
Query: 301 atgaagatggtgcaggtttaattatctaccctcttcactcctggacatctgtaacacaca 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 atgaagatagtgcaggtttaattatctaccctcttcactcctggacatctgtaacacaca 734
Query: 361 tcagtgtaaaatcagactctgggacacttatattaagttgctatgttcaggatttctctg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ccagtgtaaaatcagactctgggacacttatattaagttgctatgttcaggatttctctg 674
Query: 421 ccataagtgacaaagaacaaacaggctaatagtaaaagacaggctctaccaccatgtcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ccataagtgacaaagaacaaacaggctaatagtaaaagacaggctctaccaccatgtcca 614
Query: 481 ggagtcagagaaagggctgaaagagagagcaggatctatgggctatgatgtgggcatggg 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggagtcagagaaagggctgaaagggagagcaggatctatgggctatgatgtgggcatggg 554
Query: 541 taacatttcatacaatgacatgagcagtgcctttgcctctgtgtgtaagaacatggcata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taacatttcatacaatgacatgagcagtgcctttgcctctgtgtgtaagaacatggcata 494
Query: 601 ttctggacacagagacggactctgtgaccttgggcatgtaggttggtaagacattggtgc 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcctggacacagagacggactctgtgaccttgggcatgtaggttggtaagacattggtgc 434
Query: 661 atacagcagagaaatgtgagaaaaagatgaaca 693
|||||||||||||||||||||||||||||||||
Sbjct: 433 atacagcagagaaatgtgagaaaaagatgaaca 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_d19.g1 MSMg01no137_d19.g1 CHROMAT_FILE:
MSMg01no137_d19.g1 PHD_FILE: MSMg01no137_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:51 2005
(667 letters)
>mm_chr14_18417087_18418153
Length = 1067
Score = 1265 bits (654), Expect = 0.0
Identities = 660/662 (99%)
Strand = Plus / Plus
Query: 6 gaattcccataagggaaccaagctaatttaaagagagtagaaatactgattcccataggc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcccataagggaaccaagctaatttaaagagagtagaaatactgattcccataggc 265
Query: 66 aaaagaaaatttcaatctctagtgcacaacatacattatgagtgactgcagatatattac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaagaaaatttcaatctctagtgcacaacatacattatgagtgactgcagatatattac 325
Query: 126 ttgtctttttgtagtagctgggaactcatggaggaaatagcaaagtcaatctttgggccc 185
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 326 ttgtctttttgtagtagctgggaactcatggaggtaatagcaaagtcaatctttgggccc 385
Query: 186 atggatgaaataatgataacttagctgcaaaacaattttttgaatatattttagaattga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atggatgaaataatgataacttagctgcaaaacaattttttgaatatattttagaattga 445
Query: 246 attgaatactgaatattatttataattaaaacatttgtccatcaaagggtatattgtgga 305
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 446 attgaatactgaatattatttagaattaaaacatttgtccatcaaagggtatattgtgga 505
Query: 306 agtgaaaagaagaacccacatggagggaaagactagttcaaatgatagagactgaccacc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtgaaaagaagaacccacatggagggaaagactagttcaaatgatagagactgaccacc 565
Query: 366 actacttcaaactgctttaaaatccaaaattctcagcaccatataataccctgatgagga 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 actacttcaaactgctttaaaatccaaaattctcagcaccatataataccctgatgagga 625
Query: 426 aatccgcatctgagcttctctgagttgccacagccacagttgagacatgctggacacacc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aatccgcatctgagcttctctgagttgccacagccacagttgagacatgctggacacacc 685
Query: 486 ctcagccttgccttcaggctgcctcacctgtagacccaggcactaccacaaagctacctc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctcagccttgccttcaggctgcctcacctgtagacccaggcactaccacaaagctacctc 745
Query: 546 attatgcatatgcacatacccacaaacctctgagaaactgaactccaaaccatttaagaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 attatgcatatgcacatacccacaaacctctgagaaactgaactccaaaccatttaagaa 805
Query: 606 gcagatcatttcagataagaaatcctccagccaaaggaatctcagtccagaatcaacaag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gcagatcatttcagataagaaatcctccagccaaaggaatctcagtccagaatcaacaag 865
Query: 666 aa 667
||
Sbjct: 866 aa 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
