BAC Information

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BAC

Clone NameMSMg01-139P05
Chromosome14 (Build37)
Map Location 108,392,528 - 108,392,976
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754
Downstream geneLOC668757, EG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139P05.T7 (MSMg01no139_p05.b1)MSMg01-139P05.TJ (MSMg01no139_p05.g1)
ACCAG345222AG345223
length702698
length of high quality
(start - end)
460 (47 - 506)476 (77 - 552)
definitionCHROMAT_FILE: MSMg01no139_p05.b1 PHD_FILE: MSMg01no139_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:31 2005CHROMAT_FILE: MSMg01no139_p05.g1 PHD_FILE: MSMg01no139_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGAGCCATACAGAATGGCTTTGAAGCACTTGAAAAAATG
TTCAACATTCTTAATCATCAGGGACATGAAAATCGAAACAACTGTGAGAT
TCTACCTCACACCAGTCAGAATGGCTAGGATCAAAAATTCAGGTGACAGC
AGATGCTGGTGAGGATATGGGGAAAGGATATGTACAACCACTCTGGAAAT
CAGTCTGGTGAGTCCTTAGAAAATTGGACATAGTACTACCAGTAGATTCA
GCAATACCTCTCCTGGGCATATACTCAGAAGATGTTCCAACTGGTAATAA
GGACACATGCTCTACTATGTTCATAGCAGCCTTATTTATAATAGCTAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGAATTCAGAATGTG
TGGTACATTTAAACAATGGAGTACTACTCAGCTATTAAAAACAATGAATT
TATCAAGTTCTCAGTCAAATGGATTTATCTGGAGGATATCATCCTGAGTG
ATGTAACCCAATCACAAAAGAAGTCACTTCATATGCACTCACTGACAAGC
GGATATTAGCCCAGAAACCTAGAATATCCACGATACAACTTCCAAAACAC
CACAAAATCAGGAAGGAAGACTCACGCGCGGATACTTTGATACTTTTAGG
GA
CCCGAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGGCTTTACCATCTGGTGACA
CAATTGTAGATGATTGTAGATATGTCCTAGATATCTCAGGTGTTGTTATG
TAGTGCTTAATGCAATCTGAATAAACATTGAATAGAGTGAGCCACAGACT
CTGCCCCTGTTTGAGGAGAATTTTGGTATTTTCTTGAAAAAAAATCATTT
TAGAAATCCATTAACTGTATAAGAACTGGTATTTCTAAAGCATGCATTCA
TTGTATTTATCAAAAAGCTGGAGTGTTTGTGTGCCTGGGAATTTGGGGCT
AGTAATGAACATTATTGTTTAATTTTGTCCTTTAAAATATGTCTTCATAT
TTTTAGGAAAATAATTTTATGTTATCATAGTTTTGCCAACACTTACAAAC
TTTTCATTTTGTACTCAAATTAGAAACATAACAAGGAACATATTCTTTTT
CTGTTCAAAATATGTAAGGATTATATTTTCAATTATGGCATATGTAATTT
AAGACCCAATTCTATAGTTTGCTTTGTCTCACGATGGCTCAGATATTTAT
ATTTTCTACAATTCATAATCTTCAATTTTTTTTCTGATCATCTATATAGC
CATAACAAACTCTTCGATTCTGACCCCCCTAATATAGCGTTTTCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_p05.g1 MSMg01no139_p05.g1 CHROMAT_FILE:
MSMg01no139_p05.g1 PHD_FILE: MSMg01no139_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:31 2005
         (476 letters)



>mm_chr14_108392302_108393176
          Length = 875

 Score =  770 bits (398), Expect = 0.0
 Identities = 437/450 (97%), Gaps = 1/450 (0%)
 Strand = Plus / Plus

                                                                       
Query: 27  attgtagatgattgtagatatgtcctagatatctcaggtgttgttatgtagtgcttaatg 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 attgtagatgattgtagatatgtcctagatatctcaggtgttgttatgtagtgcttaatg 286

                                                                       
Query: 87  caatctgaataaacattgaatagagtgagccacagactctgcccctgtttgaggagaatt 146
           ||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 287 caatctgaataaatactgtatagagtgagccacagaccctgcccctgtttgaggagaatt 346

                                                                       
Query: 147 ttggtattttcttgaaaaaaaatcattttagaaatccattaactgtataagaactggtat 206
           |||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 347 ttggtattttcttg-aaaaaaatcattatagaaatccattaactgtctaagaactggtat 405

                                                                       
Query: 207 ttctaaagcatgcattcattgtatttatcaaaaagctggagtgtttgtgtgcctgggaat 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttctaaagcatgcattcattgtatttatcaaaaagctggagtgtttgtgtgcctgggaat 465

                                                                       
Query: 267 ttggggctagtaatgaacattattgtttaattttgtcctttaaaatatgtcttcatattt 326
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 466 ttggggctagtaatgaacattattgtttaattttgtcctttaaaatatctcttcatattc 525

                                                                       
Query: 327 ttaggaaaataattttatgttatcatagttttgccaacacttacaaacttttcattttgt 386
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttaggaaaataattttatgttttcatagttttgccaacacttacaaacttttcattttgt 585

                                                                       
Query: 387 actcaaattagaaacataacaaggaacatattctttttctgttcaaaatatgtaaggatt 446
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 586 actcaaattagaaacataacaagaaacatattccttttctgttcaaaatatgtaaggatt 645

                                         
Query: 447 atattttcaattatggcatatgtaatttaa 476
           ||||||||||||||||||||| ||||||||
Sbjct: 646 atattttcaattatggcatatataatttaa 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space:   403090
Effective search space used:   403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)