BAC Information

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BAC

Clone NameMSMg01-140D21
Chromosome14 (Build37)
Map Location 84,655,228 - 84,655,895
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream genePcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140D21.T7 (MSMg01no140_d21.b1)MSMg01-140D21.TJ (MSMg01no140_d21.g1)
ACCAG345437AG345438
length717715
length of high quality
(start - end)
674 (44 - 717)642 (74 - 715)
definitionCHROMAT_FILE: MSMg01no140_d21.b1 PHD_FILE: MSMg01no140_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:55 2005CHROMAT_FILE: MSMg01no140_d21.g1 PHD_FILE: MSMg01no140_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTCCAGTTCTGACAGAGAGGAAATGGAAGGAAGATCTGATTCCCATT
ATTAGATACCCATTTAACAATTCTGGGAAACGGTAATTGTCATTCATATT
TTTGTTTAGAATCCTAAAAGTGGTCTTGCCTGACAATGCTGTAACGGGGA
GGCTGTTTTTGATCAAGTCCGTTGCTTTCCTTTTCCAAGTGAACTGGATA
ATGCAACCGTGCCTCTTTACTTCTTAATCAGATCAGCAGCATCGTGATGG
GGCTCGCAAGCGCAGTTTTAGGTTGCAGACCGCACGAAATATCTGTCCTA
ATTGCTTGTCTTCTTCAACAGAAAATACACAATGTTCATATTTAGTAAAC
AGAGCAAAACTCCAACAAACATAAATTATTGACTTCTTTTTAGCAAATGT
TTGAGGGTAAATGCTTCTTTTCCAAAGCAAAATACGTGCCGCCACCAAAC
TCCATGTAGACTTTCACAGAAAATCAGTTTTCTAAAACATGCTAAAAGCC
TTACTGATAATCTTAGGCTGCAGAAGCTTTGAAAATGACACCCTAGGGAG
AAGTCTAACCTCCGCATTCAAAGATAAAGAAACACAAATTTGCCTGTCTC
TGTGATAGTTCTTCTATAATATCGGAATGAAGAACAGGGGCATTGCGGAA
GGTCTTTATAGAAAGCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTTAA
AAGTACTTGAAAATATGTTCAACATCCTTAATCATCAGAGAAATGCAAAT
CAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGTTAAGATCA
AAAATTCAAGTGACAGCAGATGCTGCCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGACTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCA
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTATGAAG
GACACATGCTCCACCATGTTAATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGGTGCCCCTCAACAGAGGAATGGATACAAAAAATGT
GGTGCATTTACACAATGGAATACTACTCAGCTATTAAAAAGAATGAATTC
ATGAAATTCCTAGGCAAATGTTTGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGGG
GATATTGGCCCAGAAACTTAGTATAGCAATATATAAGGTACAATTTGCAA
AACACATGAAACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_d21.b1 MSMg01no140_d21.b1 CHROMAT_FILE:
MSMg01no140_d21.b1 PHD_FILE: MSMg01no140_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:55 2005
         (674 letters)



>mm_chr14_84655023_84656096
          Length = 1074

 Score = 1208 bits (625), Expect = 0.0
 Identities = 658/669 (98%), Gaps = 2/669 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctccagttctgacagagaggaaatggaaggaagatctgattcccattattagata 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattctccagttctgaaagagaggaaatggaaggaagatctgattcccattattagata 814

                                                                       
Query: 66  cccatttaacaattctgggaaacggtaattgtcattcatatttttgtttagaatcctaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 cccatttaacaattctgggaaacggtaattgtcattcatatttttgtttagaatcctaaa 754

                                                                       
Query: 126 agtggtcttgcctgacaatgctgtaacggggaggctgtttttgatcaagtccgttgcttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 agtggtcttgcctgacaatgctgtaacggggaggctgtttttgatcaagtccgttgcttt 694

                                                                       
Query: 186 ccttttccaagtgaactggataatgcaaccgtgcctctttacttcttaatcagatcagca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ccttttccaagtgaactggataatgcaaccgtgcctctttacttcttaatcagatcagca 634

                                                                       
Query: 246 gcatcgtgatggggctcgcaagcgcagttttaggttgcagaccgcacgaaatatctgtcc 305
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 633 gcatcgtgatggggctcgtaagcgcagttttaggttgcagactgcacgaaatatctgtcc 574

                                                                       
Query: 306 taattgcttgtcttcttcaacagaaaatacacaatgttcatatttagtaaacagagcaaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 taattgcttgtcttcttcaacagaaaatacacaatgttcatatttagtaaacagagcaaa 514

                                                                       
Query: 366 actccaacaaacataaattattgacttctttttagcaaatgtttgagggtaaatgcttct 425
           | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 attccaacaaatataaattattgacttctttttagcaaatgtttgagggtaaatgcttct 454

                                                                       
Query: 426 tttccaaagcaaaatacgtgccgccaccaaactccatgtagactttcacagaaaatcagt 485
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 453 tttccaaagcaaaatacgcgccgccaccaaactccatgtagactttcacagaaaagcagt 394

                                                                       
Query: 486 tttctaaaacatgctaaaagccttactgataatcttaggctgcagaagctttgaaaatga 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttctaaaacatgctaaaagccttactgataatcttaggctgcagaagctttgaaaatga 334

                                                                       
Query: 546 caccctagggagaagtctaacctccgcattcaaagataaagaaacacaaatttgcctgtc 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caccctagggagaagtctaacctccgcattcaaagataaagaaacacaaatttgcctgtc 274

                                                                       
Query: 606 tctgtgatagttcttctataatatcggaatgaagaacaggggcattgcggaaggt-cttt 664
           |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||
Sbjct: 273 tctgtgatagttcttctataatatcggaataaagaacaggggcattgggga-ggttcttt 215

                    
Query: 665 atagaaagc 673
           |||||||||
Sbjct: 214 atagaaagc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)