Query= MSMg01no140_f09.b1 MSMg01no140_f09.b1 CHROMAT_FILE:
MSMg01no140_f09.b1 PHD_FILE: MSMg01no140_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:02 2005
(474 letters)
>mm_chr14_13329251_13330125
Length = 875
Score = 745 bits (385), Expect = 0.0
Identities = 467/533 (87%), Gaps = 61/533 (11%)
Strand = Plus / Plus
Query: 3 ggaattcttcatctcgct-accacttctcctgatagctgtgatcagccttgtgtagtggg 61
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttcatctcgattaccacttctcctgatagctgtgatcagccttgtgtagtggg 262
Query: 62 ggcttagaggggcatgttgggagctcacaggtgattcaaatgcagagcccaggctctgac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggcttagaggggcatgttgggagctcacaggtgattcaaatgcagagcccaggctctgac 322
Query: 122 ctggttcctactcttctttagctttcttgattcccttttcttttctattctgtgtgttct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctggttcctactcttctttagctttcttgattcccttttcttttctattctgtgtgttct 382
Query: 182 ctacatcagagcttacttgatgatcatacattgtaatttcacggaagatacattccctcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctacatcagagcttacttgatgatcatacattgtaatttcacggaagatacattccctcc 442
Query: 242 ttccccacacatcaggtttaaacagaagctcgtaagcttgtaaacgatgctttaggaaca 301
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 443 ttccccacacatcaggtttaaacagaagctcggaagcttgtaaatgatgctttaggaaca 502
Query: 302 cacacttgtacacagacttgtatgcaaacacacacacacacacacacaca---------- 351
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cacacttgtacacagacttgtatgcaaacacacacacacacacacacacagacacacaca 562
Query: 352 ------------------cacactctcagagagagagagagagagagagagagagag--- 390
||||| | |||||||||||||||||||||||||||||||
Sbjct: 563 cacacacacacacacacacacacacacagagagagagagagagagagagagagagaggga 622
Query: 391 -----------------------------agagagagagagagcccctggcctctgattc 421
|||||||||||||||||||||||||||||||
Sbjct: 623 gagagagagagagagagagagagagagagagagagagagagagcccctggcctctgattc 682
Query: 422 cacctaactgcacactggctagcttcacttcttgtatatcatgatcccggaaa 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cacctaactgcacactggctagcttcacttcttgtatatcatgatcccggaaa 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 875
Length adjustment: 10
Effective length of query: 464
Effective length of database: 865
Effective search space: 401360
Effective search space used: 401360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_f09.g1 MSMg01no140_f09.g1 CHROMAT_FILE:
MSMg01no140_f09.g1 PHD_FILE: MSMg01no140_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:02 2005
(523 letters)
>mm_chr14_13477846_13478767
Length = 922
Score = 926 bits (479), Expect = 0.0
Identities = 512/523 (97%), Gaps = 1/523 (0%)
Strand = Plus / Minus
Query: 1 ccactgccctctttgaagtctttctcatcctcccatttaagaaaagccacatagagaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 722 ccactgccctctttgaagtctttctcatcctcccatttaagaaaagccacacagagaagc 663
Query: 61 tttcccagttattaaaagggcatgtatcctgggaaagatggctcaagaggttactagcac 120
||| |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 662 ttttgcagttagtaacagggcatgtatcct-ggaaagatggctcaagaggttactagcac 604
Query: 121 attgatgtgaattgatcggacagttagaaacaaaaccattctataatgtcaagaacatgt 180
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 603 atcgatgtgaactgatcggacagatagaaacaaaaccattctataatgtcaagaacatgt 544
Query: 181 gaatccaaagagttgtacaaacatgttatccaaacatgagctatgtttttatgcccttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 543 gaatccaaagagttgtacaaacatgttatccaaacatgagctatgtttttatgccctaca 484
Query: 241 acttctcctctcatgaatgaaggagtgctaacagactacattttataaaacaatgatcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acttctcctctcatgaatgaaggagtgctaacagactacattttataaaacaatgatcct 424
Query: 301 gttatcacttggcgattcgtgggcattggtatttgaatggaggtcttggctaacacccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gttatcacttggcgattcgtgggcattggtatttgaatggaggtcttggctaacacccaa 364
Query: 361 tctagatttctggtctgcttctccttcatcatcataggagcagttggaggtcattacctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctagatttctggtctgcttctccttcatcatcataggagcagttggaggtcattacctc 304
Query: 421 aagatgacaatctatttttgcattatgtttgcattatgattttaaagtttattgcataaa 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagatgacattctatttttgcattatgtttgcattatgattttaaagtttattgcataaa 244
Query: 481 aactcttagatgcatatttcctattatagggtgaatatttata 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aactcttagatgcatatttcctattatagggtgaatatttata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 922
Length adjustment: 10
Effective length of query: 513
Effective length of database: 912
Effective search space: 467856
Effective search space used: 467856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
