Query= MSMg01no140_f21.b1 MSMg01no140_f21.b1 CHROMAT_FILE:
MSMg01no140_f21.b1 PHD_FILE: MSMg01no140_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:04 2005
(649 letters)
>mm_chr14_11000358_11001406
Length = 1049
Score = 841 bits (435), Expect = 0.0
Identities = 553/645 (85%), Gaps = 83/645 (12%)
Strand = Plus / Plus
Query: 7 attctttcccaatac--cgcattgagcttttaccatttggaaaccaggatgtctttgccc 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctttcccaa-acaatgcattgagcttttaccatttggaaaccaggatgtctttgccc 265
Query: 65 agagatgggaaggcatggctgaaagaagtaggcttggcacaaagtagaaaaagttagcgg 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agagatgggaaggcatgactgaaagaagtaggcttggcacaaagtagaaaaagttagcgg 325
Query: 125 aggagctgccagggtggagcactcaccaaggagcccgcagaggagctgccagggtggagc 184
|||||| |||
Sbjct: 326 aggagc------------------------------------------------tgg--- 334
Query: 185 actcaccaaggagcctgcagaggagctgccagggtggagcactcaccaaggagcctgcag 244
|||||||||||||||||||||||||||||||
Sbjct: 335 -----------------------------cagggtggagcactcaccaaggagcctgcag 365
Query: 245 aggagctgccaggtggagctttccttgaactgcctgcactgaaatcccctctggtctcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aggagctgccaggtggagctttccttgaactgcctgcactgaaatcccctctggtctcct 425
Query: 305 gggctgatgaggaatgtccaagccctgaagcccagagaaagtcaagtggccccatatcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gggctgatgaggaatgtccaagccctgaagcccagagaaagtcaagtggccccatatcac 485
Query: 365 atttccgagaccgacatagttttacttgacctttcaatttagcagacataataaagcatc 424
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atttccgagattgagatagttttacttgacctttcaatttagcagacataataaagcatc 545
Query: 425 tcgatatggactcattcctcactaaaagtggatcttaagtccagtaactgatgttttcat 484
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 546 tcaatatggactcatccctcactaaaagtggatcttaagtccagtaactgatgtttttat 605
Query: 485 aaaagaaaagatgagagagactggggaaagaatttagtttataaggttcttactgccaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaaagaaaagatgagagagactggggaaagaatttagtttataaggttcttactgccaca 665
Query: 545 agcctgcagacctgagtacctagtacacacatggaaagaactaagcatggtagtctatga 604
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 666 agcctgcagacctgagtacctagtacccacatggaaagaactaagcatggtagtctatga 725
Query: 605 ttataataatagcataagggagatggagataggcagtcgcctttg 649
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttataataatagcataagggagatggagataggcagtcgcctttg 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_f21.g1 MSMg01no140_f21.g1 CHROMAT_FILE:
MSMg01no140_f21.g1 PHD_FILE: MSMg01no140_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:04 2005
(399 letters)
>mm_chr14_11172403_11173201
Length = 799
Score = 675 bits (349), Expect = 0.0
Identities = 381/399 (95%), Gaps = 12/399 (3%)
Strand = Plus / Minus
Query: 1 cattggatgctttaaatacttttgatgacacttccttggtctggccaatcacagttgctt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cattggatcctttaaatacttttgatgacacttccttggtctggccaatcacagttgctt 344
Query: 61 ttatttatttctgtggtggtggagatcaaacttaaggccagttgtatgctagagagttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttatttatttctgtggtggtggagatcaaacttaaggccagttgtatgctagagagttct 284
Query: 121 ctcccactgtcttcttctttaggtatctgttatgccagtatctcgtgttgaatcctttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctcccactgtcttcttctttaggtatctgttatgccagtatctcgtgttgaatcctttcc 224
Query: 181 taataagcagtgatgttggacttaaagacaacaaaacaaaacaaaaaacgaaacaaaact 240
||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 223 taataagcagtgatgttggacttaaagacaacaaaac------------gaaacagaact 176
Query: 241 aatcaagtcttcttgggcatgcggttgaacttccctaagcctctgcttttgcgtctgtaa 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aatcaagtcttcttgggcatgtggttgaacttccctaagcctctgcttttgcgtctgtaa 116
Query: 301 gatgggtgaattctcagtcacttccaggattgtcactggcaccagactgacacaggttga 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 115 gatgggtgaattctcagtcacttccaggattgtcactggcatgagactgacacaggctga 56
Query: 361 gtcactggtgtatggtctaggaaggttgttagttcttag 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 55 gtcactggtgtatggtctaggaaggttgttagttcttag 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
