BAC Information

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BAC

Clone NameMSMg01-140L14
Chromosome14 (Build37)
Map Location 79,093,833 - 79,094,111
singlet/doubletsinglet
Overlap geneDgkh
Upstream geneD230005D02Rik, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11
Downstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140L14.T7 (MSMg01no140_l14.b1)MSMg01-140L14.TJ (MSMg01no140_l14.g1)
ACCAG345785AG345786
length725716
length of high quality
(start - end)
64 (73 - 136)270 (79 - 348)
definitionCHROMAT_FILE: MSMg01no140_l14.b1 PHD_FILE: MSMg01no140_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:32 2005CHROMAT_FILE: MSMg01no140_l14.g1 PHD_FILE: MSMg01no140_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCG
CGGAATTCTGTGCTGTCTACCCAGCTCTTAAGCTTTGTTTCTATCTAGTG
CTGTATTAAACTTAAGCTTGAGGCCTGCTAGCCATGGTGTTACATGCCTG
AAGCTCCAGGATTTACTAGTCAGGGGTTGGCGGATACCAATTTTCTATTC
CTCTTTGGCCACATAATACGTCTGCTATCTGTCTGGTTTACATGACACTT
ATTACTCAGAAACATATAACTGAGTTCTTATTTGCCCAGACCCCCGTGTC
CACTTACTGTCCTTTATTTTTTTTCTCAACCCCGCTTTGCAACATGACTC
CATATCTTTTTTTTCCCCCCTCTCTTCTTCTTGTTTATGCTTTTTGTTCG
GCTTTCCCTCCAGTTCTCCCGTATTCTGCCTCTCCCCTTGCTCCCCTCCT
CTCTTTTCTCTTTTACTTCTCCCGTCGTCTGCCTTTTTTCCCTCCCCATA
ATCTTGCCTCTTTTCAAACACCACATATTACCTCATTCTTCATTATTCTC
ACCCAAACTCACACCTTCTCACTATCCTACCTTCTCCATACACCCTCTCT
CTTTATCCACCTACTTATTTCCTCCACTCAATATATCATCTTACTCCTCT
TCACGTCCTTCCTCATATCCCATCCGCTTTTCCCTTCACCCCCTCCTTTT
CCTTTTTCCTTCTCCCCTTACATCA
NNAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTTCTGTTTCCCCTTGTATGG
TCCAGGGATCTCAGGCTGGTTGGCAGGTGTCCACTGAGCCATGTCTTCTA
GTCTCCTCATTCTCCATTCCAGTTTTTTTCTCTCTGAGGTTTGCTCTATT
GTCTGTTGGATTTTTTTCTTTTTTATTGTTGAGAATTGCTGGGTTGGCCA
TATTGTGTTTGGTAATTTAATGTCTGTTTTACCCAAATAGAAAAATTAAG
TGCTGCCTCATGCTATACTTCTTGTTCTTCCATCCTTACTGTACCCACTA
CTTCAGACTTGTTGATATGTTTGCGACTAAATAATATCTCACGGTTTCCG
ATCTATATGGATGTTATTTATTTCCATCAACTCTTTTTTTTTTTTCCCTT
CTTCTCTTCTTCTTTTTATTATCTTATTCTCTTCTCATCTTCTCCTTTTT
TTTTATCATTACCATTCATCTATTACTATTTATTTTTTCTTATTCATATA
TACTTGTTACCTAAATTTCTCTCTGATTTTCCCTATTTTTATTATATAGT
GTCTACTCATAACACTCTTTCCTTATTCTTTACTCCATATTATTTCCTTT
ATATTATAACTTCATAACATATTTATATCACCTTCATTTCCTTTTTCTTT
TTTTCATCCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_l14.g1 MSMg01no140_l14.g1 CHROMAT_FILE:
MSMg01no140_l14.g1 PHD_FILE: MSMg01no140_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:32 2005
         (270 letters)



>mm_chr14_79093741_79094410
          Length = 670

 Score =  449 bits (232), Expect = e-130
 Identities = 264/280 (94%), Gaps = 11/280 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgttctgtttccccttgtatggtccagggatctcaggctggttggcaggtgtccactgag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 371 cgttctgtttccccttgtatggtctagggatctcaggctggttggcaggtgtccactgag 312

                                                                       
Query: 61  ccatgtcttctagtctcctcattctccattcca-gtttttttctctctgaggtttgctct 119
           ||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||
Sbjct: 311 ccatgtcttctagtctcctcattctccgttccatttttttttctctctgaggtttgctct 252

                                                                       
Query: 120 attgtctgttggatttttttcttttttattgttgagaattgctgggttgg---------c 170
           ||||||||||||| ||||||||||||||||||||||||||||||||||||         |
Sbjct: 251 attgtctgttgga-ttttttcttttttattgttgagaattgctgggttggcctaattttc 193

                                                                       
Query: 171 catattgtgtttggtaatttaatgtctgttttacccaaatagaaaaattaagtgctgcct 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 catattgtgtttggtaatttaatgtctgttttacccaaatagaaaaattaagtgctgcct 133

                                                   
Query: 231 catgctatacttcttgttcttccatccttactgtacccac 270
           |||||||||||||  |||||||||||||||||||||||||
Sbjct: 132 catgctatacttcaggttcttccatccttactgtacccac 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)