BAC Information

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BAC

Clone NameMSMg01-141H04
Chromosome14 (Build37)
Map Location 48,834,113 - 48,964,959
singlet/doubletdoublet
Overlap genePeli2, EG624367
Upstream geneWdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2
Downstream geneLOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141H04.T7 (MSMg01no141_h04.b1)MSMg01-141H04.TJ (MSMg01no141_h04.g1)
ACCAG346318AG346319
length1,2211,239
length of high quality
(start - end)
671 (87 - 757)646 (123 - 768)
definitionCHROMAT_FILE: MSMg01no141_h04.b1 PHD_FILE: MSMg01no141_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:51 2005CHROMAT_FILE: MSMg01no141_h04.g1 PHD_FILE: MSMg01no141_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,964,289 - 48,964,959)(48,834,113 - 48,834,758)
sequence
NCGGTTTTTTNNNGACATTCGCGCTAAGACTCCTATGGGAGAGGATCCGC
GGAATTCCATCTCATGGAGTGGACCATTGATGCACCTGGTTGGTTACTCC
CCCAAGCTATGTGCCCTGCCAATACACATCACAGGCCTTGTGGCTGGCTC
GGTGTCTGTGGTTCTCTTTTGGTAGTGTGCAGAGTGCCTTCCTGTGCCAA
AGACACTAGACTGTAGAGATATAGTGAGGCCCTGTCTTACTAGAGGAGAG
GCCAGTGCTCCAAGGGTCTGGCCTGAGCAGAGTATGCTGATAGAAGCTTG
CAGACCACAGGAGCAGAAAGGCATCAATGTTCTTAGGTCGTTAGAATCGA
ACACCAACGGAAGACATAAATCCCATTCGAGTGATTTTCATTGCAAATCC
TGGTAGGTTTAAAGCAACTGTGGGAGAGAGCCCTGGATTAGCAGCTGGGA
GGTCGGACGTTCACTGCCTGGACTCAGCTGCAATTCATCCCTGCGGTTCC
TCACAGAAATGAGGCAAGAACAGGTTGCCAGCCTGAGATCCTTTCAGCAT
CCTGAAGTAGGCAAGTGACAAGAAGATTGGAAGTCCTTGCTCTCGAAGGA
CAGCCGAGTGCCAATAAGCCATTAGTGGAACAAAGGACCTAAACCTTGCT
ACCTTTGCTGGGAGAGGTCAAGGTCATGTGCCAGCCTGGGGACTCCAAAG
GCCGTCCAAGAGAGGGCCCCACAAACCACTCAACGAGAGCGGAGTTTTTC
TACTGGCAGCCAGCAGTCTTAGAAGTTTAACCTTAATTTGCCAAAACCAC
GAGGCAAGAAATGTTAAAAAGAAGAGGGGGAAGAATCTTCCAAAGGGAGT
GCTGACATAAGCTTTCTCTAGAAAAGGCTTGACACCGTCTGTTTTCCGTG
AACGTATGTGCACATTAACTTTCTCTAAGGAATCCTAGATGTTTCCAAAA
CATTTTTTGGCCTCCCTTTCTCTCTCTATCTTCCCATTTGTTTGAAATTA
AAATTTAAGGGGCTTAAAGAAGTCCTTCCCTTGGTAAAACTTGTGTTTGG
AATGAAAATCCTAAAAAACAACTTTGGGAAGAATTTCCTAACTCCATTGG
CTTAGAAATATAAAACCTTTGGGCCCCTTTTTTTCCCCGGGGCCTAAGTG
GCAAAAGGGGTTCTCTTATATTGAAACTTTTACTTGGTTGGGTTCGGTGG
TGTTAATACCCGTGTTATCTC
CCGTCTTTTTNNAACGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTAAGCGCTCACCTCTGAGGCGGG
GCAGACCCTACTTCCACAGTGCACGCTGCTTATCCGGAACCTCATTCTAG
TCAGACTCCTCCCATCCAACTCTTCAATCCCCTTTCCTTGCACAGCATCA
AATTCTACCTCCCCATAACTCCTTTCTGCTTGTCTAATATTTGGTTCCTT
GAAGCAACAGAGACGAATCTCTTTACCATGTGGCCTTTGGGGTTTTGTGC
CTCTCTCGGGTCCTTCAACAGATAACAAACCTCTTTCCTTGGTTAGATTT
GGTGTGTCCAGACTTGTAGAGCATCACCGTCTGAAATCCACTGGGCATCT
ACTTTGTCTGCCCCTCAGACACTCCATGGTCATGATTGCTTGTGATATTC
CAGTTGTGACCTAACCACATGTAAGTGTAGCGATGGCCCAGTGCTTCTTT
ATGGCTGTGCGTTTCTGCAGCTCCGTGGTGCTGGACCTTGCAGTGGTAGT
AATACAGCAGCGGTGGGTGGTAGATGAGTTCTCACCTCCCCGCTACATCA
CTCTCCAAACCCAGACTTTTATTCATGTGAACATAGTCATCCTGGAAACG
GGGGTAATGAGCCTTTGTTTAAAAAAAAGAAAAAAAAAGTACACGGTGTA
CTGTCATTGCTTCTGTTTGGGTGTGCTGAGAGACTATTCTGTTTATCTTT
ACTAAAGAATATTTCCTTGAATAGAAAATTACCTTAGAATATGAAAGTCT
CTTGGAATGTTTAAAGACTTATCATTTTTATTTAGCATGATGTCAACCAG
GTTCTTGTCTGCAGAGGTTAGTATATACACAGCTAATAATTCCTTTTTTT
TCCCATTTTTTATAAGGAATTTAGCTCATTTACCTTTCCCATGCTTATAC
CAAAAGGCTCCCAATACCAACCTTTCTCAAATTCTCTAAACCATCTATTT
CCTCCCTTTTTTGGATCTTGTTGTCCCCCCCGTTACTTGGTGCATATAAT
AATTTGTCTTTCCTTAATGTACCTCTTCTTTTCCCAGTGAGGGGTCGCAA
ATAACGTCATCACTTTTTTATAACTTTTTGTTCCTCTATATTTCATTAAC
ATTCTCCCGTAATTATCTTTCTTACCTCTTCTACATTGTTCCTCTTCCCT
TATATTAACTTCTCTTACACCTCTCTCTTTATCTCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_h04.b1 MSMg01no141_h04.b1 CHROMAT_FILE:
MSMg01no141_h04.b1 PHD_FILE: MSMg01no141_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:51 2005
         (671 letters)



>mm_chr14_48963955_48965025
          Length = 1071

 Score = 1243 bits (643), Expect = 0.0
 Identities = 664/671 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    tggttggttactcccccaagctatgtgccctgccaatacacatcacaggccttgtggctg 60
            ||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||
Sbjct: 1005 tggttggttactcccccaagctatgtgctatgccaatacacatcacagggtttgtggctg 946

                                                                        
Query: 61   gctcggtgtctgtggttctcttttggtagtgtgcagagtgccttcctgtgccaaagacac 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  gctcggtgtctgtggttctcttttggtagtgtgcagagtgccttcctgtgccaaagacac 886

                                                                        
Query: 121  tagactgtagagatatagtgaggccctgtcttactagaggagaggccagtgctccaaggg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  tagactgtagagatatagtgaggccctgtcttactagaggagaggccagtgctccaaggg 826

                                                                        
Query: 181  tctggcctgagcagagtatgctgatagaagcttgcagaccacaggagcagaaaggcatca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  tctggcctgagcagagtatgctgatagaagcttgcagaccacaggagcagaaaggcatca 766

                                                                        
Query: 241  atgttcttaggtcgttagaatcgaacaccaacggaagacataaatcccattcgagtgatt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  atgttcttaggtcgttagaatcgaacaccaacggaagacataaatcccattcgagtgatt 706

                                                                        
Query: 301  ttcattgcaaatcctggtaggtttaaagcaactgtgggagagagccctggattagcagct 360
            |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 705  ttcattgcaaatcctggtaggggcaaagcaactgtgggagagagccctggattagcagct 646

                                                                        
Query: 361  gggaggtcggacgttcactgcctggactcagctgcaattcatccctgcggttcctcacag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  gggaggtcggacgttcactgcctggactcagctgcaattcatccctgcggttcctcacag 586

                                                                        
Query: 421  aaatgaggcaagaacaggttgccagcctgagatcctttcagcatcctgaagtaggcaagt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  aaatgaggcaagaacaggttgccagcctgagatcctttcagcatcctgaagtaggcaagt 526

                                                                        
Query: 481  gacaagaagattggaagtccttgctctcgaaggacagccgagtgccaataagccattagt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525  gacaagaagattggaagtccttgctctcgaaggacagccgagtgccaataagccattagt 466

                                                                        
Query: 541  ggaacaaaggacctaaaccttgctacctttgctgggagaggtcaaggtcatgtgccagcc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465  ggaacaaaggacctaaaccttgctacctttgctgggagaggtcaaggtcatgtgccagcc 406

                                                                        
Query: 601  tggggactccaaaggccgtccaagagagggccccacaaaccactcaacgagagcggagtt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405  tggggactccaaaggccgtccaagagagggccccacaaaccactcaacgagagcggagtt 346

                       
Query: 661  tttctactggc 671
            |||||||||||
Sbjct: 345  tttctactggc 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no141_h04.g1 MSMg01no141_h04.g1 CHROMAT_FILE:
MSMg01no141_h04.g1 PHD_FILE: MSMg01no141_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:51 2005
         (646 letters)



>mm_chr14_48833913_48834958
          Length = 1046

 Score = 1241 bits (642), Expect = 0.0
 Identities = 645/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgctgcttatccggaacctcattctagtcagactcctcccatccaactcttcaatcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgctgcttatccggaacctcattctagtcagactcctcccatccaactcttcaatcccc 260

                                                                       
Query: 61  tttccttgcacagcatcaaattctacctccccataactcctttctgcttgtctaatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccttgcacagcatcaaattctacctccccataactcctttctgcttgtctaatattt 320

                                                                       
Query: 121 ggttccttgaagcaacagagacgaatctctttaccatgtggcctttggggttttgtgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttccttgaagcaacagagacgaatctctttaccatgtggcctttggggttttgtgcct 380

                                                                       
Query: 181 ctctcgggtccttcaacagataacaaacctctttccttggttagatttggtgtgtccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcgggtccttcaacagataacaaacctctttccttggttagatttggtgtgtccaga 440

                                                                       
Query: 241 cttgtagagcatcaccgtctgaaatccactgggcatctactttgtctgcccctcagacac 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 cttgtagagcatcaccgtctgaaatccactgggcatctactttgcctgcccctcagacac 500

                                                                       
Query: 301 tccatggtcatgattgcttgtgatattccagttgtgacctaaccacatgtaagtgtagcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccatggtcatgattgcttgtgatattccagttgtgacctaaccacatgtaagtgtagcg 560

                                                                       
Query: 361 atggcccagtgcttctttatggctgtgcgtttctgcagctccgtggtgctggaccttgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggcccagtgcttctttatggctgtgcgtttctgcagctccgtggtgctggaccttgca 620

                                                                       
Query: 421 gtggtagtaatacagcagcggtgggtggtagatgagttctcacctccccgctacatcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtggtagtaatacagcagcggtgggtggtagatgagttctcacctccccgctacatcact 680

                                                                       
Query: 481 ctccaaacccagacttttattcatgtgaacatagtcatcctggaaacgggggtaatgagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctccaaacccagacttttattcatgtgaacatagtcatcctggaaacgggggtaatgagc 740

                                                                       
Query: 541 ctttgtttaaaaaaaagaaaaaaaaagtacacggtgtactgtcattgcttctgtttgggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttgtttaaaaaaaagaaaaaaaaagtacacggtgtactgtcattgcttctgtttgggt 800

                                                         
Query: 601 gtgctgagagactattctgtttatctttactaaagaatatttcctt 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgctgagagactattctgtttatctttactaaagaatatttcctt 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)