Query= MSMg01no142_e01.b1 MSMg01no142_e01.b1 CHROMAT_FILE:
MSMg01no142_e01.b1 PHD_FILE: MSMg01no142_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:41 2005
(702 letters)
>mm_chr14_19641948_19643050
Length = 1103
Score = 1305 bits (675), Expect = 0.0
Identities = 696/703 (99%), Gaps = 1/703 (0%)
Strand = Plus / Minus
Query: 1 gggaccagttctcatgggtagatcaaagcacaaagcccacagtgactgaagcagagggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gggaccagttctcatgggtagatcaaagcacaaagcccacagtgactgaagcagagggag 844
Query: 61 aactcagaggaaggacatatacagctcagtgtagcagactaccctgtggaaatatgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 aactcagaggaaggacatatacagctcagtgtagcagactaccctgtggaaatatgggag 784
Query: 121 ctgggccccatttataagggaattttctttccttagaccccaagggaccaagcgtgaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ctgggccccatttataagggaattttctttccttagaccccaagggaccaagcgtgaaaa 724
Query: 181 aaataagttatagtaataataggaactggaagtcctttgaaaatgttgattttacgtgga 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 723 aaataagttatagtaataataggagctggaagtcctttgaaaatgttgattttacgtgga 664
Query: 241 ggcctcccagaagccccactctaatggaggcctagagtagtttatttatctttggcacac 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 663 ggcctcccagaagccccactctaatggaggcctagagtagcttatttatctttggcacac 604
Query: 301 ctctgagaaagcgacagtgtgataggcaggaccctgcctctgggcccttgatgctttgca 360
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctctgagtaagcgacggtgtgataggcaggaccctgcctctgggcccttgatgctttgca 544
Query: 361 gccaacacgcccctctttttccactcaatttgtacatctgggattttcctactacaagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gccaacacgcccctctttttccactcaatttgtacatctgggattttcctactacaagat 484
Query: 421 gtttcacatctagagtaagagtgagaagtccattcatcttgatcctgctgcatccgcagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gtttcacatctagagtaagagtgagaagtccattcatcttgatcctgctgcatccgcagc 424
Query: 481 aatgtggcgtgcggattgatggtctctgagtgatggtcattgtaggaatggcattttatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatgtggcgtgcggattgatggtctctgagtgatggtcattgtaggaatggcattttatc 364
Query: 541 cacacggtttagctgagtttgcctgctgctctctttacaattctgctcctacagtttaga 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 363 cacacggtttagctgagtttgcctgctgctctctttacaattctgctcctacagttcaga 304
Query: 601 ggcccaggcttactgtgcatcccaggaggcagccaggagccagggatagaagcaatgaga 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 303 ggcccaggcttactgtgcatcccaggaggcagccaggagccagagatagaagcaatgaga 244
Query: 661 acccttgggtgtggttgta-ccccccaccctgtcaggccaggc 702
||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 243 acccttgggtgtggttgtacccccccaccctgtcaggccaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1103
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1093
Effective search space: 756356
Effective search space used: 756356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_e01.g1 MSMg01no142_e01.g1 CHROMAT_FILE:
MSMg01no142_e01.g1 PHD_FILE: MSMg01no142_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:41 2005
(681 letters)
>mm_chr14_19548168_19549249
Length = 1082
Score = 1295 bits (670), Expect = 0.0
Identities = 679/682 (99%), Gaps = 1/682 (0%)
Strand = Plus / Plus
Query: 1 acataaagcacagaaatctttttttttttt-aatctgagaagcatgctgatttcaacaaa 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 acataaagcacagaaatctttttttttttttaatctgagaagcatgctgatttcaacaaa 260
Query: 60 aacctgtataaagaagatatttcaggctataaataaaaccattgacaacagttttaaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctgtataaagaagatatttcaggctataaataaaaccattgacaacagttttaaaaa 320
Query: 120 aacttaggaagttttaatctattacttgtacagtttcaaatgctatgtttctaacagtta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttaggaagttttaatctattacttgtacagtttcaaatgctatgtttctaacagtta 380
Query: 180 cccaagtgcgacattcaatgcaaacaacaaatgaattcatggtccctgatctctactagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaagtgcgacattcaatgcaaacaacaaatgaattcatggtccctgatctctactagg 440
Query: 240 gtagaaattattaagctctctgacaaagtttagtaatgctaggagtgtgggctctgaata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaaattattaagctctctgacaaagtttagtaatgctaggagtgtgggctctgaata 500
Query: 300 aagaggctcaatgattattaccattacagaaataatccattgagctggacaaaattattg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaggctcaatgattattaccattacagaaataatccattgagctggacaaaattattg 560
Query: 360 ttgtttgctttttgaagcatgatctcaccatgtaactctagctggcttagaacttgtcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtttgctttttgaagcatgatctcaccatgtaactctagctggcttagaacttgtcat 620
Query: 420 gtaaaccagttggctttaaactctgatggatcaaaggtatgtaatgagaaagctaggctg 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaaaccagttggcttcaaactctgatggatcaaaggtatgtaatgagaaagctaggctg 680
Query: 480 acttcacaacaggcttcaaattggcaatttaggagacaaagcctaaatctgtttccaaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttcacaacaggcttcaaattggcaatttaggagacaaagcctaaatctgtttccaaga 740
Query: 540 actgggcaagtctaggcaaggccaggcctcagaagtgccccacctggtctgaggcaagga 599
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actgggcaagtctaggcaagtccaggcctcagaagtgccccacctggtctgaggcaagga 800
Query: 600 caatgggtcagcaacagtttccagactgcctcagcaacagtttccagcccctacaccctg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caatgggtcagcaacagtttccagactgcctcagcaacagtttccagcccctacaccctg 860
Query: 660 gtaatggaatgtccctagagat 681
||||||||||||||||||||||
Sbjct: 861 gtaatggaatgtccctagagat 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space: 719312
Effective search space used: 719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
