BAC Information

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BAC

Clone NameMSMg01-142L01
Chromosome14 (Build37)
Map Location 104,627,328 - 104,627,998
singlet/doubletsinglet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142L01.T7 (MSMg01no142_l01.b1)MSMg01-142L01.TJ (MSMg01no142_l01.g1)
ACCAG347237AG347238
length1,2161,196
length of high quality
(start - end)
671 (128 - 798)645 (130 - 774)
definitionCHROMAT_FILE: MSMg01no142_l01.b1 PHD_FILE: MSMg01no142_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:41 2005CHROMAT_FILE: MSMg01no142_l01.g1 PHD_FILE: MSMg01no142_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAACTCTNNNNNNAACAGTGGGCGCTNXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTCCATCTTCCAGCCCTTTAAATACCGGTGTCATTCTC
AATGCCTGGCTTCTTGCCCTGGTGCCAGAGATTTAAACTCAGGTCCTCAT
GTTTGTTTAATAAATACTTTACTGACTAAGTTTTCCCAAGCCCTTAAATA
ATTTGTAAACCATAAGTAGGTGGGCTATAGAGATGGCTCAGTAATTAAAA
ACATATACGGCTCTTGCAAAGGACCTTGGTTCTGTTCCCATCACCTGACC
ATCAGTTCACAACCTCTTATAAATGCTGTTCCAGGGGATCCATTACCCTC
TTCTGGCCTCTGTTGGATTCTGCATGCACATAAACCCATTCAGGCAAATA
TACATGCATATAAATTAAGTAAATAAATCTTTTACAAGACATGACCAGAT
TGTTGCTATTATGAATATATTTACATATATCAAGTTCGCCATTTAACTGC
CTGGCAAAGAAGTAATACACTCTATTTCCATTAGCTAGAGGAGAGTTATC
ACCTTCCGGATCGAGAGGGATACTGGGATGTGTTACTTCTGGCTTGACAA
TGTCTCAAGCAACAACTGGACATTTACAGAATAAGAAGAATGAGTCTTTG
ATAGACTACTAGGCTTTTCTATGAAACAGCTAANAATGCAAACTTTATTC
TTTATTATTTAAAATGAAATTGAAAATGCAGTTAATTCATATTTAATAAC
CAAAGTATAATGAGATCAGGACAAAAATTATCCCTAATAGAAACCTAGTC
TTTTAAGGGCTTATCATCTAAAGCAGTGGTTCTCAATTCCTGGGGGTCGA
CTGACCCTTTCACAGGGGTCACGTAACAGATATTCAGCATTAAAGATATT
TATATTATGATTTATAACAGTAGTACAATTACGGTTATGAAGTTACCATG
AAAATAATTTTATGACTGGGAATCCCCCCCAACATGGAAAAAATGGTTTT
AAAGGGCTTGCACCATTAAGGGAAATTTCCTGAATTACGAATCTAAAAAA
AAGGGAACCTTACTCTCAATTTTTACCCCAGATGGGGTATTTCTCTCGGG
CCCTCCAAAAAGTGTGAAAGAAGACCAAGGGTAACCCCTTTTTGAAATGT
CCCTTTTCATAACCCACTTTTTGAAATGGGTTCTTGAAAAAAACTGGAAA
CTCTTCTCCCTAACTT
NCAACACTTTTTTTTACGATCGGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAGCCGCACGAAACCGAAT
GGCAGAGAAGCACCTGACCCTATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACTTATGCTCCACTATGTTCATAGCAGCATTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAA
TTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACAC
TATGCCCCTCCTTAGAAGTGGGACCAAAACACCCTTGGAAGGAGTTACAG
AGACAAAGTTTGGAGCTGAGATTAAAGGGTGGACCATGTAAAGACTGCCT
TATCCAGTGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCA
TACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTG
AGACTATGCCGGGGCTTAACAAACACAGAAGTGAATGCCCCCAGGTCGCT
AATGGAAGGATTCACGGGGCTTCCAAAGGAAGGAACTAGAAAAAGTCCCC
AGGAAGCTTAAAGGAAATTGGCCCCCCTATTGGGGGGATCCCCCTTTTGA
AATTTACCCCGTACCCCCGAAATCTTTTAAAACTCAACGGGCCAAAGGTT
TTCCAAAAGAATGGCCTTAATCCGGCCCTTCTCCTGGTAAATAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_l01.b1 MSMg01no142_l01.b1 CHROMAT_FILE:
MSMg01no142_l01.b1 PHD_FILE: MSMg01no142_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:41 2005
         (671 letters)



>mm_chr14_104627128_104628198
          Length = 1071

 Score = 1276 bits (660), Expect = 0.0
 Identities = 668/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagatttaaactcaggtcctcatgtttgtttaataaatactttactgactaagttttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagatttaaactcaggtcctcatgtttgtttaataaatactttactgactaagttttccc 260

                                                                       
Query: 61  aagcccttaaataatttgtaaaccataagtaggtgggctatagagatggctcagtaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcccttaaataatttgtaaaccataagtaggtgggctatagagatggctcagtaatta 320

                                                                       
Query: 121 aaaacatatacggctcttgcaaaggaccttggttctgttcccatcacctgaccatcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacatatacggctcttgcaaaggaccttggttctgttcccatcacctgaccatcagtt 380

                                                                       
Query: 181 cacaacctcttataaatgctgttccaggggatccattaccctcttctggcctctgttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaacctcttataaatgctgttccaggggatccattaccctcttctggcctctgttgga 440

                                                                       
Query: 241 ttctgcatgcacataaacccattcaggcaaatatacatgcatataaattaagtaaataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgcatgcacataaacccattcaggcaaatatacatgcatataaattaagtaaataaa 500

                                                                       
Query: 301 tcttttacaagacatgaccagattgttgctattatgaatatatttacatatatcaagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttttacaagacatgaccagattgttgctattatgaatatatttacatatatcaagttc 560

                                                                       
Query: 361 gccatttaactgcctggcaaagaagtaatacactctatttccattagctagaggagagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccatttaactgcctggcaaagaagtaatacactctatttccattagctagaggagagtt 620

                                                                       
Query: 421 atcaccttccggatcgagagggatactgggatgtgttacttctggcttgacaatgtctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcaccttccggatcgagagggatactgggatgtgttacttctggcttgacaatgtctca 680

                                                                       
Query: 481 agcaacaactggacatttacagaataagaagaatgagtctttgatagactactaggcttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 agcaacaactggacatttacagaataagaagaatgagtctttgatagactattaggcttt 740

                                                                       
Query: 541 tctatgaaacagctaanaatgcaaactttattctttattatttaaaatgaaattgaaaat 600
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 tctatgaaacagctaaaaatgcaaactgtattctttattatttaaaatgaaattgaaaat 800

                                                                       
Query: 601 gcagttaattcatatttaataaccaaagtataatgagatcaggacaaaaattatccctaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcagttaattcatatttaataaccaaagtataatgagatcaggacaaaaattatccctaa 860

                      
Query: 661 tagaaacctag 671
           |||||||||||
Sbjct: 861 tagaaacctag 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)